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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Escherichia fergusonii ATCC 35469  

Data for CU928158  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU928158.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU928158_0260 CDS_296531-293775 99.9 6e-28 1
CU928158_2530 CDS_2697357-2696062 88.8 8.3e-25 1
CU928158_1127 CDS_1230638-1227894 82.2 6.1e-23 1
CU928158_0890 CDS_965524-968373 80.6 1.8e-22 1
CU928158_3088 CDS_3272430-3270094 80.1 2.5e-22 1
CU928158_0889 CDS_965357-963531 77.1 1.8e-21 1
CU928158_0482 CDS_520482-521909 75.4 5.4e-21 1
CU928158_2082 CDS_2206156-2207559 69.8 2.1e-19 1
CU928158_3702 CDS_3954710-3956083 66.6 1.7e-18 1
CU928158_3608 CDS_3847270-3845894 61.5 4.7e-17 1
CU928158_2445 CDS_2604460-2605920 61.0 6.4e-17 1
CU928158_3743 CDS_4004189-4005238 59.7 1.5e-16 1
CU928158_4316 CDS_4583614-4585038 59.4 1.8e-16 1
CU928158_2869 CDS_3037301-3038656 58.6 3.1e-16 1
CU928158_2325 CDS_2476286-2478970 58.2 4.1e-16 1
CU928158_3257 CDS_3430979-3429627 55.0 3.2e-15 1
CU928158_3999 CDS_4278612-4277470 48.7 1.9e-13 1
CU928158_1362 CDS_1469764-1468478 38.9 1.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU928158_0260 1/1 292 357 .. 1 87 [] 99.9 6e-28
CU928158_2530 1/1 203 269 .. 1 87 [] 88.8 8.3e-25
CU928158_1127 1/1 445 510 .. 1 87 [] 82.2 6.1e-23
CU928158_0890 1/1 469 534 .. 1 87 [] 80.6 1.8e-22
CU928158_3088 1/1 282 347 .. 1 87 [] 80.1 2.5e-22
CU928158_0889 1/1 388 453 .. 1 87 [] 77.1 1.8e-21
CU928158_0482 1/1 249 317 .. 1 87 [] 75.4 5.4e-21
CU928158_2082 1/1 240 304 .. 1 87 [] 69.8 2.1e-19
CU928158_3702 1/1 238 300 .. 1 87 [] 66.6 1.7e-18
CU928158_3608 1/1 237 303 .. 1 87 [] 61.5 4.7e-17
CU928158_2445 1/1 265 331 .. 1 87 [] 61.0 6.4e-17
CU928158_3743 1/1 129 186 .. 1 79 [. 59.7 1.5e-16
CU928158_4316 1/1 255 320 .. 1 87 [] 59.4 1.8e-16
CU928158_2869 1/1 236 302 .. 1 87 [] 58.6 3.1e-16
CU928158_2325 1/1 663 730 .. 1 87 [] 58.2 4.1e-16
CU928158_3257 1/1 233 293 .. 1 87 [] 55.0 3.2e-15
CU928158_3999 1/1 145 205 .. 1 87 [] 48.7 1.9e-13
CU928158_1362 1/1 211 271 .. 1 87 [] 38.9 1.1e-10

Alignments of top-scoring domains:
CU928158_0260: domain 1 of 1, from 292 to 357: score 99.9, E = 6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CU928158_0 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll +ind+Ld+s++eag
CU928158_0 328 ----------RDHLNTIERSANNLLTIINDVLDFSKLEAG 357

CU928158_2530: domain 1 of 1, from 203 to 269: score 88.8, E = 8.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l +r
CU928158_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMHE---------QPLEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
CU928158_2 240 ----------EKALHTMREQTHRMEGLVKQLLTLSKIEAA 269

CU928158_1127: domain 1 of 1, from 445 to 510: score 82.2, E = 6.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+a+lL + ++ + q
CU928158_1 445 AKSAFLAAMSHEIRTPLYGILGTAQLLAD---------NPALSTQ-- 480

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll ++nd+Ld+s ieag
CU928158_1 481 ----------RDDLRAITDSGESLLTILNDILDYSAIEAG 510

CU928158_0890: domain 1 of 1, from 469 to 534: score 80.6, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CU928158_0 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CU928158_0 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CU928158_3088: domain 1 of 1, from 282 to 347: score 80.1, E = 2.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CU928158_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLNAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ +ie
CU928158_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKIERR 347

CU928158_0889: domain 1 of 1, from 388 to 453: score 77.1, E = 1.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++++ ++ +e+
CU928158_0 388 TLGELMAGVAHEVRNPLTAIRGYVQIIRQ---------QTPQPEH-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lLd+sr +
CU928158_0 424 ----------QEYLSIVLNEIDSINKVIQQLLDFSRPRKS 453

CU928158_0482: domain 1 of 1, from 249 to 317: score 75.4, E = 5.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CU928158_0 249 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r +a
CU928158_0 288 ----------KEVVSILDSSSRNLQKLIEQLLDYNRKQAD 317

CU928158_2082: domain 1 of 1, from 240 to 304: score 69.8, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ + ++e+
CU928158_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RKFTPET-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CU928158_2 278 -------------VASLQAEVGTLTKLVDDLHQLSMSDEG 304

CU928158_3702: domain 1 of 1, from 238 to 300: score 66.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CU928158_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CU928158_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CU928158_3608: domain 1 of 1, from 237 to 303: score 61.5, E = 4.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +++++ e
CU928158_3 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RAPAGGEA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l + +
CU928158_3 274 ----------HQLAQVMAKEADRLNRVVSELLELVKPTHL 303

CU928158_2445: domain 1 of 1, from 265 to 331: score 61.0, E = 6.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t +++ +e++l + +s +++
CU928158_2 265 RQSNFSADIAHEIRTPITNLITQTEIALS---------QSRSQKEL- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e+ r+ ++++d+L l++++++
CU928158_2 302 ----------EDVLYSNLEELTRMAKMVSDMLFLAQADNN 331

CU928158_3743: domain 1 of 1, from 129 to 186: score 59.7, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CU928158_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CU928158_3 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

CU928158_4316: domain 1 of 1, from 255 to 320: score 59.4, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +e
CU928158_4 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPEIV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r++ L++ lL +r+e+
CU928158_4 291 ----------TRFTENILTQNARMQTLVETLLRQARLENR 320

CU928158_2869: domain 1 of 1, from 236 to 302: score 58.6, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ + +++ r
CU928158_2 236 RERRFTSDAAHELRSPLTALKVQTEVAQL---------SVDDPQVR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l +++ +er rL+++lL+lsr+++
CU928158_2 273 ----------DKALMQLHEGIERATRLVDQLLTLSRLDSL 302

CU928158_2325: domain 1 of 1, from 663 to 730: score 58.2, E = 4.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CU928158_2 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ + rL+n+lLd++ri++g
CU928158_2 701 ----------AHQASEIRQHVLNTTRLVNNLLDMARIQSG 730

CU928158_3257: domain 1 of 1, from 233 to 293: score 55.0, E = 3.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CU928158_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CU928158_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CU928158_3999: domain 1 of 1, from 145 to 205: score 48.7, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CU928158_3 145 NERLFTADVAHELRTPLAGVRLHLELLAK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +l ++++ + +++lL+l+r+++
CU928158_3 176 ----------HVDVSPLLARLDQMMASVSQLLQLARAGQS 205

CU928158_1362: domain 1 of 1, from 211 to 271: score 38.9, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + lse +
CU928158_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSEAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r++ +l++Li++lL+++r++ +
CU928158_1 245 -------------SLALNRDIGQLESLIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 1 0|=
-15 1 0|=
-14 16 0|==
-13 61 3|*====
-12 187 97|======*=======
-11 439 505|================================ *
-10 725 938|==================================================== *
-9 760 969|======================================================= *
-8 769 725|===================================================*===
-7 544 457|================================*======
-6 288 263|==================*==
-5 209 144|==========*====
-4 103 77|=====*==
-3 50 40|==*=
-2 30 21|=*=
-1 23 11|*=
0 16 5|*=
1 12 3|*
2 8 1|*
3 4 0|=
4 0 0|
> 5 21 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 279.1182
P(chi-square) = 0

Total sequences searched: 4319

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: