Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Escherichia fergusonii ATCC 35469  

Data for CU928158  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CU928158.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU928158_1667 CDS_1788622-1790418 82.2 6.4e-24 1
CU928158_0665 CDS_728482-726770 77.0 2.2e-22 1
CU928158_3804 CDS_4070283-4068781 64.2 1.3e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU928158_1667 1/1 390 458 .. 1 70 [] 82.2 6.4e-24
CU928158_0665 1/1 363 430 .. 1 70 [] 77.0 2.2e-22
CU928158_3804 1/1 304 370 .. 1 70 [] 64.2 1.3e-18

Alignments of top-scoring domains:
CU928158_1667: domain 1 of 1, from 390 to 458: score 82.2, E = 6.4e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ pe re l +i
CU928158_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
CU928158_1 435 RNELNASWAQLRELLTTFRlQLTE 458

CU928158_0665: domain 1 of 1, from 363 to 430: score 77.0, E = 2.2e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r + + d++ a+ ++
CU928158_0 363 ERATIARELHDSLAQVLSYLRIQLTLLKRSI--PQDNDTAQSIMADF 407

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
CU928158_0 408 SRALNDAYQQLRELLTTFRLTLQ 430

CU928158_3804: domain 1 of 1, from 304 to 370: score 64.2, E = 1.3e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++++++ + i
CU928158_3 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNARVKQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
CU928158_3 348 EQLSLGVYDAVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-16 2 0|=
-15 2 0|=
-14 27 0|==
-13 98 0|=======
-12 173 47|===*========
-11 244 391|================= *
-10 700 907|=============================================== *
-9 837 1030|======================================================== *
-8 667 794|============================================= *
-7 526 499|=================================*==
-6 367 282|==================*======
-5 289 151|==========*=========
-4 150 79|=====*====
-3 76 40|==*===
-2 44 20|=*=
-1 19 10|*=
0 20 5|*=
1 12 2|*
2 5 1|*
3 2 0|=
4 1 0|=
5 0 0|
6 0 0|
7 2 0|=
> 8 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 806.7762
P(chi-square) = 0

Total sequences searched: 4319

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: