Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Escherichia coli IAI39  

Data for CU928164  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CU928164.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CU928164_0282 CDS_316218-314923 91.0 2.4e-25 1
CU928164_2496 CDS_2606176-2609769 81.6 1e-22 1
CU928164_2147 CDS_2207377-2210121 81.1 1.5e-22 1
CU928164_2341 CDS_2431919-2429118 80.6 2.1e-22 1
CU928164_3682 CDS_3862643-3860307 78.9 6.3e-22 1
CU928164_2742 CDS_2865597-2864170 75.4 6.1e-21 1
CU928164_2342 CDS_2432134-2433960 73.6 2e-20 1
CU928164_0931 CDS_992199-990796 69.8 2.4e-19 1
CU928164_3066 CDS_3209376-3210749 66.6 1.9e-18 1
CU928164_4889 CDS_5127111-5128535 62.4 2.9e-17 1
CU928164_4360 CDS_4587103-4588479 61.5 5.3e-17 1
CU928164_0540 CDS_574582-573140 61.0 7.3e-17 1
CU928164_3113 CDS_3263960-3265009 59.7 1.8e-16 1
CU928164_3499 CDS_3674999-3676348 59.6 1.8e-16 1
CU928164_0649 CDS_693554-690870 59.6 1.8e-16 1
CU928164_3858 CDS_4030615-4029263 55.0 3.6e-15 1
CU928164_1082 CDS_1168716-1170074 52.3 2.1e-14 1
CU928164_4501 CDS_4741004-4739904 46.7 8.5e-13 1
CU928164_1442 CDS_1525622-1524321 42.4 1.4e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CU928164_0282 1/1 203 269 .. 1 87 [] 91.0 2.4e-25
CU928164_2496 1/1 711 777 .. 1 87 [] 81.6 1e-22
CU928164_2147 1/1 443 508 .. 1 87 [] 81.1 1.5e-22
CU928164_2341 1/1 453 518 .. 1 87 [] 80.6 2.1e-22
CU928164_3682 1/1 282 347 .. 1 87 [] 78.9 6.3e-22
CU928164_2742 1/1 249 317 .. 1 87 [] 75.4 6.1e-21
CU928164_2342 1/1 388 453 .. 1 87 [] 73.6 2e-20
CU928164_0931 1/1 240 304 .. 1 87 [] 69.8 2.4e-19
CU928164_3066 1/1 238 300 .. 1 87 [] 66.6 1.9e-18
CU928164_4889 1/1 255 320 .. 1 87 [] 62.4 2.9e-17
CU928164_4360 1/1 237 303 .. 1 87 [] 61.5 5.3e-17
CU928164_0540 1/1 261 327 .. 1 87 [] 61.0 7.3e-17
CU928164_3113 1/1 129 186 .. 1 79 [. 59.7 1.8e-16
CU928164_3499 1/1 236 302 .. 1 87 [] 59.6 1.8e-16
CU928164_0649 1/1 663 730 .. 1 87 [] 59.6 1.8e-16
CU928164_3858 1/1 233 293 .. 1 87 [] 55.0 3.6e-15
CU928164_1082 1/1 235 301 .. 1 87 [] 52.3 2.1e-14
CU928164_4501 1/1 145 205 .. 1 87 [] 46.7 8.5e-13
CU928164_1442 1/1 211 271 .. 1 87 [] 42.4 1.4e-11

Alignments of top-scoring domains:
CU928164_0282: domain 1 of 1, from 203 to 269: score 91.0, E = 2.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l r
CU928164_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMDE---------QPLEGAVR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
CU928164_0 240 ----------EKALHTMREQTQRMEGLVKQLLTLSKIEAA 269

CU928164_2496: domain 1 of 1, from 711 to 777: score 81.6, E = 1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++I+g++elL + ls eqr
CU928164_2 711 AKSQFLATMSHEIRTPISSIMGFLELLSG---------SGLSKEQR- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ ++ +++ll Li ++Ld +ie+g
CU928164_2 748 ----------VEAISLAYATGQSLLGLIGEILDVDKIESG 777

CU928164_2147: domain 1 of 1, from 443 to 508: score 81.1, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+a+lL + ++ q
CU928164_2 443 AKSAFLAAMSHEIRTPLYGILGTAQLLAD---------NPALNTQ-- 478

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll ++nd+Ld+s ieag
CU928164_2 479 ----------RDDLRAITDSGESLLTILNDILDYSAIEAG 508

CU928164_2341: domain 1 of 1, from 453 to 518: score 80.6, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CU928164_2 453 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CU928164_2 489 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 518

CU928164_3682: domain 1 of 1, from 282 to 347: score 78.9, E = 6.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CU928164_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CU928164_3 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CU928164_2742: domain 1 of 1, from 249 to 317: score 75.4, E = 6.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CU928164_2 249 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r +a
CU928164_2 288 ----------KEVVSILDSSSRNLQKLIEQLLDYNRKQAD 317

CU928164_2342: domain 1 of 1, from 388 to 453: score 73.6, E = 2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++L+ ++ + +
CU928164_2 388 TLGELMAGVAHEVRNPLTAIRGYVQILRQ---------QTSDLIH-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lL++sr ++
CU928164_2 424 ----------QEYLSVVLKEIDSINKVIQQLLEFSRPRHS 453

CU928164_0931: domain 1 of 1, from 240 to 304: score 69.8, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ + ++e+
CU928164_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RKFTPET-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CU928164_0 278 -------------VASLQAEVGTLTKLVDDLHQLSMSDEG 304

CU928164_3066: domain 1 of 1, from 238 to 300: score 66.6, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CU928164_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CU928164_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CU928164_4889: domain 1 of 1, from 255 to 320: score 62.4, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ +e
CU928164_4 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPEVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ il + r+++L++ lL +r+e+
CU928164_4 291 ----------ARFTDNILTQNARMQALVETLLRQARLENR 320

CU928164_4360: domain 1 of 1, from 237 to 303: score 61.5, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +++++ e
CU928164_4 237 ALGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RAPAGGEA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l + +
CU928164_4 274 ----------HQLAQVMAKEADRLNRVVSELLELVKPTHL 303

CU928164_0540: domain 1 of 1, from 261 to 327: score 61.0, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t +++ +e++l + +s +++
CU928164_0 261 RQSNFSADIAHEIRTPITNLITQTEIALS---------QSRSQKEL- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e+ r+ ++++d+L l++++++
CU928164_0 298 ----------EDVLYSNLEELTRMAKMVSDMLFLAQADNN 327

CU928164_3113: domain 1 of 1, from 129 to 186: score 59.7, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CU928164_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CU928164_3 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

CU928164_3499: domain 1 of 1, from 236 to 302: score 59.6, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ ++ +++ r
CU928164_3 236 RERRFTSDAAHELRSPLTALKVQTEVAQL---------SDDDPQAR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ ++r rL+++lL+lsr+++
CU928164_3 273 ----------KKALLQLHYGIDRATRLVDQLLTLSRLDSL 302

CU928164_0649: domain 1 of 1, from 663 to 730: score 59.6, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CU928164_0 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CU928164_0 701 ----------ARQASEIRQHVLNTTRLVNNLLDMARIQSG 730

CU928164_3858: domain 1 of 1, from 233 to 293: score 55.0, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
CU928164_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CU928164_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CU928164_1082: domain 1 of 1, from 235 to 301: score 52.3, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ +l+HELRTP++a++g ++ l +++s +
CU928164_1 235 RLSQFADDLAHELRTPINALLGQNQVTLS---------QTRSIAE-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + ++e+e ++rL +++L l+r++ +
CU928164_1 271 ---------YQKTIAGNIEELENISRLTENILFLARADKN 301

CU928164_4501: domain 1 of 1, from 145 to 205: score 46.7, E = 8.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CU928164_4 145 NERLFTADVAHELRTPLAGVRLHLELLAK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ ++++ + +++lL+l+r+++
CU928164_4 176 ----------HIDVASLVARLDQMMESVSQLLQLARAGQS 205

CU928164_1442: domain 1 of 1, from 211 to 271: score 42.4, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls+ +
CU928164_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSAAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CU928164_1 245 -------------SQALNRDISQLEALIEELLTYARLDRP 271


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-16 1 0|=
-15 4 0|=
-14 19 0|==
-13 65 3|*====
-12 204 108|======*======
-11 508 560|================================ *
-10 815 1040|=================================================== *
-9 892 1074|======================================================== *
-8 829 804|==================================================*=
-7 560 507|===============================*===
-6 340 291|==================*===
-5 210 160|=========*====
-4 107 85|=====*=
-3 60 45|==*=
-2 35 23|=*=
-1 32 12|*=
0 16 6|*
1 6 3|*
2 7 1|*
3 1 0|=
4 0 0|
> 5 21 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 260.0611
P(chi-square) = 0

Total sequences searched: 4892

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: