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2 accessions found for Photorhabdus asymbiotica  

Data for FM162591  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM162591.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM162591_0828 CDS_932056-929726 91.7 1.3e-25 1
FM162591_3496 CDS_4100488-4099151 88.8 8.7e-25 1
FM162591_1558 CDS_1790947-1793778 86.8 3.3e-24 1
FM162591_3777 CDS_4387228-4384427 79.8 3.1e-22 1
FM162591_3639 CDS_4246476-4244131 74.7 8.6e-21 1
FM162591_4304 CDS_4965790-4967160 70.3 1.5e-19 1
FM162591_1325 CDS_1506271-1507746 70.2 1.6e-19 1
FM162591_2984 CDS_3460065-3462764 66.8 1.5e-18 1
FM162591_0178 CDS_192002-190953 65.6 3.2e-18 1
FM162591_1764 CDS_1990756-1989368 61.8 3.9e-17 1
FM162591_2264 CDS_2566383-2562823 56.7 1.1e-15 1
FM162591_1445 CDS_1639517-1640938 55.9 1.8e-15 1
FM162591_0161 CDS_173170-174501 52.6 1.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM162591_0828 1/1 291 356 .. 1 87 [] 91.7 1.3e-25
FM162591_3496 1/1 203 269 .. 1 87 [] 88.8 8.7e-25
FM162591_1558 1/1 470 535 .. 1 87 [] 86.8 3.3e-24
FM162591_3777 1/1 398 463 .. 1 87 [] 79.8 3.1e-22
FM162591_3639 1/1 282 347 .. 1 87 [] 74.7 8.6e-21
FM162591_4304 1/1 238 300 .. 1 87 [] 70.3 1.5e-19
FM162591_1325 1/1 265 333 .. 1 87 [] 70.2 1.6e-19
FM162591_2984 1/1 668 735 .. 1 87 [] 66.8 1.5e-18
FM162591_0178 1/1 129 194 .. 1 87 [] 65.6 3.2e-18
FM162591_1764 1/1 234 298 .. 1 87 [] 61.8 3.9e-17
FM162591_2264 1/1 701 764 .. 1 87 [] 56.7 1.1e-15
FM162591_1445 1/1 247 312 .. 1 87 [] 55.9 1.8e-15
FM162591_0161 1/1 233 293 .. 1 87 [] 52.6 1.5e-14

Alignments of top-scoring domains:
FM162591_0828: domain 1 of 1, from 291 to 356: score 91.7, E = 1.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHELRTPL++++g++ l+ t l+ +q
FM162591_0 291 IKTEFLANMSHELRTPLNGVIGFTRQTLK---------TSLTIQQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl++i+r+a++ll++ind+Ld+sr+ea
FM162591_0 327 ----------TEYLHIIERSANHLLNIINDILDFSRLEAD 356

FM162591_3496: domain 1 of 1, from 203 to 269: score 88.8, E = 8.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHE+RTPLt+++gy+e++++ ++ s +
FM162591_3 203 ARRDFFANVSHEMRTPLTVLQGYLEMMQD---------QDVSGSLN- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r+++L+++lL+ls+ie
FM162591_3 240 ----------KKMLNTMQEQTRRMDSLVRQLLQLSKIEVA 269

FM162591_1558: domain 1 of 1, from 470 to 535: score 86.8, E = 3.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g++elL++ + l++e
FM162591_1 470 SKSMFLATVSHELRTPLYGIIGNLELLQA---------HSLPAES-- 505

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+ +++ ll++i+d+Ld+s+ie+
FM162591_1 506 ----------ARLLSTMNNSSALLLKIISDILDFSKIESK 535

FM162591_3777: domain 1 of 1, from 398 to 463: score 79.8, E = 3.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+ l ++sHELRTPL++ +g++elL++ +e++ eq
FM162591_3 398 RKSRHLTTISHELRTPLSGTLGALELLKT---------SEMDNEQ-- 433

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ et+++++ +ll +in lLd+srieag
FM162591_3 434 ----------LQLAETAHQCTLSLLFIINKLLDFSRIEAG 463

FM162591_3639: domain 1 of 1, from 282 to 347: score 74.7, E = 8.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel+ eq
FM162591_3 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELTTEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+ti+ +a l ++ nd+ ++ +ie
FM162591_3 318 ----------NNYLKTIHVSAITLGNIFNDIIEMDKIERR 347

FM162591_4304: domain 1 of 1, from 238 to 300: score 70.3, E = 1.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ lL++ + +++
FM162591_4 238 AQQRLISDISHELRTPLTRLQLATALLRR---------RHGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
FM162591_4 274 -------------LERIETEAQRLDSMINDLLVLSRSQHK 300

FM162591_1325: domain 1 of 1, from 265 to 333: score 70.2, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+ +q
FM162591_1 265 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTVDQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
FM162591_1 304 ----------QEVVAILDNSSKHLQQLIEQLLDYNRKLAD 333

FM162591_2984: domain 1 of 1, from 668 to 735: score 66.8, E = 1.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++++
FM162591_2 668 LRNSLLAALSHDLRTPLTVLFGQAEILMLDL-------SAEGSPH-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++++ + +rL+n+lLd++ri++g
FM162591_2 706 ----------TKQVNQIRQQILSTSRLVNNLLDMARIQSG 735

FM162591_0178: domain 1 of 1, from 129 to 194: score 65.6, E = 3.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++++l+HE+++PL ++rg+a+lL + +l+++ +
FM162591_0 129 AARELVRGLAHEIKNPLGGLRGAAQLLSR----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+++i+++a+rl++L+++lL +++
FM162591_0 165 ----------QEYTQVIIEQADRLRHLVDRLLGPQHPGEQ 194

FM162591_1764: domain 1 of 1, from 234 to 298: score 61.8, E = 3.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a++sHELRTPL+++rg +e+L++++ + ++e+
FM162591_1 234 MRRDYMADISHELRTPLSVLRGELEALQDGV-------RKPTSET-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l e+ l +L++dl +ls + g
FM162591_1 272 -------------LNSLLAEITTLTKLVDDLHQLSLSDRG 298

FM162591_2264: domain 1 of 1, from 701 to 764: score 56.7, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHE+RTPL aI+g ++l + +++ +
FM162591_2 701 EKSDFLAHMSHEIRTPLQAIIGILDLEVK--------QQTQQSTP-- 737

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++a +l+ +i d+Ld+s+ieag
FM162591_2 738 -------------LHIAWHAAMSLQGIIGDVLDFSKIEAG 764

FM162591_1445: domain 1 of 1, from 247 to 312: score 55.9, E = 1.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+LRTPLt++++ + ++l+ +++eq
FM162591_1 247 RQERFSADASHQLRTPLTVLKTQVAVALA----------SRNPEQ-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e l+ i++ ++ +L ++lL+lsr+ a
FM162591_1 282 ---------WKESLKAIDNTLDGTISLTDRLLQLSRLKAH 312

FM162591_0161: domain 1 of 1, from 233 to 293: score 52.6, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
FM162591_0 233 DRTILMAGVSHDLRTPLTRIRLATEMMSK--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
FM162591_0 264 ----------AYLSESINKDIEECNAIIEQFIDYLRTGQE 293


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 3 0|=
-14 29 0|===
-13 103 3|*=======
-12 261 100|=======*===========
-11 492 520|==================================== *
-10 762 965|======================================================= *
-9 796 996|========================================================= *
-8 686 746|================================================= *
-7 512 470|=================================*===
-6 311 270|===================*===
-5 172 148|==========*==
-4 103 79|=====*==
-3 62 41|==*==
-2 32 22|=*=
-1 16 11|*=
0 16 6|*=
1 12 3|*
2 3 1|*
3 0 0|
> 4 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 399.8323
P(chi-square) = 0

Total sequences searched: 4395

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: