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Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

6 accessions found for Aliivibrio salmonicida LFI1238  

Data for FM178379  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: FM178379.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM178379_2368 CDS_2542267-2543958 64.9 6e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM178379_2368 1/1 365 433 .. 1 70 [] 64.9 6e-19

Alignments of top-scoring domains:
FM178379_2368: domain 1 of 1, from 365 to 433: score 64.9, E = 6e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q+ l++r+l + d + +l+e+
FM178379_2 365 ERAAIARELHDSLAQSLSYLKIQTTLLKRQLK-KCDCQNTGSTLTEL 410

relarealaevRrllgdLRpaal<-*
e ++ a++++R+ll ++R ++
FM178379_2 411 DEGLKSAYTQLRELLNTFRLTIN 433


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 22 0|===
-13 149 0|===============
-12 232 31|===*====================
-11 197 258|==================== *
-10 514 600|==================================================== *
-9 576 681|==========================================================*
-8 371 525|====================================== *
-7 245 330|========================= *
-6 173 186|==================*
-5 151 100|=========*======
-4 109 52|=====*=====
-3 31 26|==*=
-2 19 13|=*
-1 14 7|*=
0 14 3|*=
1 3 1|*
2 1 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1483.1268
P(chi-square) = 0

Total sequences searched: 3069

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: