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Classification of phyla is from NCBI page
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264 projects found  

6 accessions found for Aliivibrio salmonicida LFI1238  

Data for FM178380  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM178380.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM178380_0316 CDS_358141-355466 96.0 2e-27 1
FM178380_0393 CDS_439495-436664 92.7 1.8e-26 1
FM178380_0053 CDS_71309-68853 91.3 4.2e-26 1
FM178380_0307 CDS_345024-342757 80.2 6e-23 1
FM178380_1012 CDS_1111270-1109534 77.4 3.8e-22 1
FM178380_0381 CDS_424120-421913 74.3 2.8e-21 1
FM178380_0198 CDS_222484-223824 60.2 2.8e-17 1
FM178380_0194 CDS_220415-219030 49.5 3.1e-14 1
FM178380_0417 CDS_470493-469318 44.0 1.1e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM178380_0316 1/1 382 447 .. 1 87 [] 96.0 2e-27
FM178380_0393 1/1 410 475 .. 1 87 [] 92.7 1.8e-26
FM178380_0053 1/1 322 387 .. 1 87 [] 91.3 4.2e-26
FM178380_0307 1/1 240 305 .. 1 87 [] 80.2 6e-23
FM178380_1012 1/1 213 278 .. 1 87 [] 77.4 3.8e-22
FM178380_0381 1/1 368 433 .. 1 87 [] 74.3 2.8e-21
FM178380_0198 1/1 227 293 .. 1 87 [] 60.2 2.8e-17
FM178380_0194 1/1 238 302 .. 1 87 [] 49.5 3.1e-14
FM178380_0417 1/1 191 257 .. 1 87 [] 44.0 1.1e-12

Alignments of top-scoring domains:
FM178380_0316: domain 1 of 1, from 382 to 447: score 96.0, E = 2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++ +L e t+l++ q
FM178380_0 382 AKSTFLANMSHEIRTPLNGIIGMSGILSE---------TKLTPIQ-- 417

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +++ ll Lind+Ld+s+ie+g
FM178380_0 418 ----------HDYLNTIETSSQTLLILINDILDISKIESG 447

FM178380_0393: domain 1 of 1, from 410 to 475: score 92.7, E = 1.8e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL++I+g+a++++ +++eq
FM178380_0 410 AKSTFLATMSHELRTPLNGILGMAQIIES---------NIKDPEQ-- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++l+++++ll+L+nd+Ld+s+ie++
FM178380_0 446 ----------HKQINVLLESGDHLLSLLNDILDFSKIEQN 475

FM178380_0053: domain 1 of 1, from 322 to 387: score 91.3, E = 4.2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g++e+L ++l++ q
FM178380_0 322 AKSSFLANMSHEIRTPLNGIIGMTEILSV---------STLTAIQ-- 357

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ti +++ ll Lind+Ldls+ie+g
FM178380_0 358 ----------KDYLATINASSQTLLMLINDVLDLSKIESG 387

FM178380_0307: domain 1 of 1, from 240 to 305: score 80.2, E = 6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sHE+RTP++a++g++ +L++ + l ++q
FM178380_0 240 SKGRFLASMSHEIRTPMNAVLGLLAILKD---------SQLKPKQ-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++et+ +++e ll++ind+Ld sr+ea+
FM178380_0 276 ----------RDLVETATDSSELLLSIINDILDCSRMEAN 305

FM178380_1012: domain 1 of 1, from 213 to 278: score 77.4, E = 3.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++ HELRTPL++++g ael+++ t+ + q
FM178380_1 213 ATRDFVAMINHELRTPLNGLLGSAELMED---------TNITQYQ-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l ti++++e l+ +indlLd+s++ ag
FM178380_1 249 ----------QTLLMTIHQAGEMLRVIINDLLDFSKMNAG 278

FM178380_0381: domain 1 of 1, from 368 to 433: score 74.3, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+an+sHELRTPL+aI+g++ L e e + e+
FM178380_0 368 KKSKFIANISHELRTPLNAILGLSLYLIE---------KEEDQEK-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+t+++++e ll+++nd+Ldls+iea+
FM178380_0 404 ----------KKTLNTLYKAGEGLLEMVNDILDLSKIEAN 433

FM178380_0198: domain 1 of 1, from 227 to 293: score 60.2, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++++HEL+TPL+ I + +++ l +++s ++
FM178380_0 227 RLSDFSSDIAHELKTPLSNIVTQTQVTLS---------HPRSTQD-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l++ l+e+er+++ ind L l++ e+
FM178380_0 263 ---------YQDILSSNLEELERINKTINDTLYLAKSEND 293

FM178380_0194: domain 1 of 1, from 238 to 302: score 49.5, E = 3.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++sHELRTPL+ ++++lL++ + e+
FM178380_0 238 KQKRLIRDVSHELRTPLARHNLALHLLRK----------RTDNEH-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++++e+ +++L+ ++L++s++e+
FM178380_0 273 ----------VHLLDRLENESAEMNNLVGEILEFSQLENA 302

FM178380_0417: domain 1 of 1, from 191 to 257: score 44.0, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef + +sHELRTP+ +I+g a+lL + ++++
FM178380_0 191 REKEFSRFASHELRTPIMVIQGSADLLAK--------VPNQPNIA-- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++++e + L + +L l + e +
FM178380_0 228 ----------LKAINRLHQASEEMTLLTETFLLLGKQEIE 257


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 1 0|=
-13 9 0|===
-12 72 22|=====*============
-11 92 116|======================= *
-10 170 216|=========================================== *
-9 229 223|=======================================================*==
-8 134 167|================================== *
-7 122 105|==========================*====
-6 64 60|==============*=
-5 37 33|========*=
-4 16 17|====*
-3 12 9|==*
-2 6 4|*=
-1 3 2|*
0 3 1|*
1 0 0|
2 3 0|=
3 0 0|
> 4 12 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 134.9162
P(chi-square) = 1.154e-24

Total sequences searched: 1105

Whole sequence top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 9
Satisfying E cutoff: 9
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: