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Thermotogae
Classification of phyla is from NCBI page
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3 accessions found for Escherichia coli O127:H6 str. E2348/69  

Data for FM180568  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: FM180568.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM180568_1346 CDS_1385575-1383779 82.2 6.9e-24 1
FM180568_2703 CDS_2775319-2777037 76.1 4.4e-22 1
FM180568_3983 CDS_4150363-4148861 63.7 2.1e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM180568_1346 1/1 390 458 .. 1 70 [] 82.2 6.9e-24
FM180568_2703 1/1 361 428 .. 1 70 [] 76.1 4.4e-22
FM180568_3983 1/1 304 370 .. 1 70 [] 63.7 2.1e-18

Alignments of top-scoring domains:
FM180568_1346: domain 1 of 1, from 390 to 458: score 82.2, E = 6.9e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ pe re l +i
FM180568_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DALPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
FM180568_1 435 RNELNASWAQLRELLTTFRlQLTE 458

FM180568_2703: domain 1 of 1, from 361 to 428: score 76.1, E = 4.4e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r + ++d++ a+ ++
FM180568_2 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNATAQSIMADF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
FM180568_2 406 SQALNDAYRQLRELLTTFRLTLQ 428

FM180568_3983: domain 1 of 1, from 304 to 370: score 63.7, E = 2.1e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
FM180568_3 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNASVKQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
FM180568_3 348 EQLSLGVYDAVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-16 2 0|=
-15 1 0|=
-14 26 0|==
-13 119 0|========
-12 166 50|===*=======
-11 266 417|================= *
-10 738 968|=============================================== *
-9 909 1099|========================================================= *
-8 732 847|============================================== *
-7 569 532|=================================*==
-6 366 301|==================*====
-5 290 161|==========*========
-4 166 84|=====*=====
-3 78 43|==*==
-2 57 22|=*==
-1 31 11|*=
0 16 5|*
1 6 2|*
2 5 1|*
3 3 0|=
4 0 0|
5 1 0|=
6 1 0|=
7 2 0|=
8 0 0|
> 9 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 750.6763
P(chi-square) = 0

Total sequences searched: 4703

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: