hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: FM180568.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-17 1 0|=
-16 4 0|=
-15 4 0|=
-14 24 0|==
-13 103 0|=======
-12 478 0|================================
-11 546 37|==*==================================
-10 861 470|===============================*==========================
-9 768 1165|==================================================== *
-8 822 1210|======================================================= *
-7 415 812|============================ *
-6 204 443|============== *
-5 140 219|========== *
-4 90 104|======*
-3 49 48|===*
-2 24 22|=*
-1 11 10|*
0 4 4|*
1 2 2|*
2 2 0|=
3 0 0|
4 0 0|
5 1 0|=
6 1 0|=
% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 7894.0571
P(chi-square) = 0
Total sequences searched: 4703
Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K
