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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Mycobacterium leprae Br4923  

Data for FM211192  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM211192.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM211192_0775 CDS_916692-918380 75.1 4e-21 1
FM211192_2446 CDS_2916351-2915026 66.9 8.8e-19 1
FM211192_0175 CDS_241232-242791 57.8 3.2e-16 1
FM211192_2128 CDS_2524794-2526134 49.7 6.5e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM211192_0775 1/1 295 362 .. 1 87 [] 75.1 4e-21
FM211192_2446 1/1 155 221 .. 1 87 [] 66.9 8.8e-19
FM211192_0175 1/1 239 311 .. 1 87 [] 57.8 3.2e-16
FM211192_2128 1/1 230 296 .. 1 87 [] 49.7 6.5e-14

Alignments of top-scoring domains:
FM211192_0775: domain 1 of 1, from 295 to 362: score 75.1, E = 4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + ++++l++
FM211192_0 295 LQRRFTSDVSHELRTPLTTVRMAADLIYD-------HSSDLDPTL-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +e + +e++r + L+ndlL++sr +ag
FM211192_0 333 ----------RRSTELMVSELDRFETLLNDLLEISRHDAG 362

FM211192_2446: domain 1 of 1, from 155 to 221: score 66.9, E = 8.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+an+sHEL+TP+ a+ ++ae+Ll+ ++ ++e++
FM211192_2 155 ARRDFVANVSHELKTPVGAMALLAEALLA---------SADDAETV- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e++l ea+rl ++ +l +lsr++
FM211192_2 192 ----------SRFAEKVLIEANRLGYMVAELIELSRLQGA 221

FM211192_0175: domain 1 of 1, from 239 to 311: score 57.8, E = 3.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ ++ HELRTPLt++r+++elL + + +++ + l+++++
FM211192_0 239 RQARLVTDAGHELRTPLTSLRTNVELLIASM---APEAPRLPDQEM- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l ++e l+ L+ dl dl+r +ag
FM211192_0 282 ----------ADLRADVLAQIEELSTLVGDLVDLTRDDAG 311

FM211192_2128: domain 1 of 1, from 230 to 296: score 49.7, E = 6.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a sHELRTPLta+r+++e+L + +l ++qr
FM211192_2 230 SARDFAAVSSHELRTPLTAMRTNLEVLAT---------LDLADDQR- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++r r+++ ++ l l++ e
FM211192_2 267 ----------KEVLGDVIRTQSRIEATLSALERLAQGELS 296


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 3 0|=
-13 24 1|*===
-12 74 36|=====*=======
-11 174 190|============================= *
-10 278 352|=============================================== *
-9 314 364|===================================================== *
-8 271 272|=============================================*
-7 192 171|============================*===
-6 114 98|================*==
-5 70 54|========*===
-4 43 29|====*===
-3 20 15|==*=
-2 14 8|=*=
-1 1 4|*
0 3 2|*
1 1 1|*
2 1 0|=
3 1 0|=
4 1 0|=
5 0 0|
> 6 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 83.9310
P(chi-square) = 8.479e-14

Total sequences searched: 2720

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: