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Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Mycobacterium leprae Br4923  

Data for FM211192  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: FM211192.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM211192_0805 CDS_952123-953625 115.2 9.3e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM211192_0805 1/1 299 381 .. 1 94 [] 115.2 9.3e-33

Alignments of top-scoring domains:
FM211192_0805: domain 1 of 1, from 299 to 381: score 115.2, E = 9.3e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+ + e +eaL Es++RV S
FM211192_0 299 EIHHRVKNNLQTVAALLRLQARRMANAEG-----REALIESVRRVSS 340

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+Al+H+ L++s d ++v+++e++++++ + + ++v++ ++ +
FM211192_0 341 IALVHDALSMSVD-EQVNLDEVIDRILPIMNDVASVDRP---IR--I 381


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 6 0|=
-13 33 10|=*===
-12 91 105|============ *
-11 447 293|====================================*===================
-10 348 379|============================================ *
-9 262 320|================================= *
-8 186 215|======================== *
-7 83 127|=========== *
-6 82 71|========*==
-5 31 38|====*
-4 16 20|==*
-3 7 10|=*
-2 6 5|*
-1 3 2|*
0 0 1|*
> 1 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 173.1278
P(chi-square) = 2.678e-31

Total sequences searched: 2720

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: