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2 accessions found for Vibrio splendidus LGP32  

Data for FM954972  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM954972.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM954972_2478 CDS_2802757-2805570 97.0 2.7e-27 1
FM954972_1037 CDS_1194499-1196955 90.2 2.3e-25 1
FM954972_1220 CDS_1417427-1413756 87.2 1.7e-24 1
FM954972_1361 CDS_1590636-1588912 84.5 9.5e-24 1
FM954972_0874 CDS_998580-994192 83.0 2.5e-23 1
FM954972_1702 CDS_1930219-1928522 77.1 1.2e-21 1
FM954972_2380 CDS_2681801-2685190 75.6 3.1e-21 1
FM954972_0517 CDS_601845-603143 75.5 3.3e-21 1
FM954972_1062 CDS_1223554-1227846 73.3 1.5e-20 1
FM954972_0427 CDS_500951-503338 68.7 2.8e-19 1
FM954972_0095 CDS_113752-112676 57.1 5.5e-16 1
FM954972_1043 CDS_1204219-1202921 54.5 3e-15 1
FM954972_2770 CDS_3096200-3092748 54.3 3.6e-15 1
FM954972_0734 CDS_841449-842489 54.2 3.8e-15 1
FM954972_0132 CDS_149898-151193 49.9 5.9e-14 2
FM954972_2090 CDS_2357530-2359338 46.7 4.9e-13 1
FM954972_2750 CDS_3068190-3069569 44.7 1.9e-12 1
FM954972_1402 CDS_1632539-1630512 41.9 1.2e-11 1
FM954972_1728 CDS_1966205-1968148 31.5 1e-08 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM954972_2478 1/1 290 355 .. 1 87 [] 97.0 2.7e-27
FM954972_1037 1/1 342 407 .. 1 87 [] 90.2 2.3e-25
FM954972_1220 1/1 479 544 .. 1 87 [] 87.2 1.7e-24
FM954972_1361 1/1 209 274 .. 1 87 [] 84.5 9.5e-24
FM954972_0874 1/1 721 786 .. 1 87 [] 83.0 2.5e-23
FM954972_1702 1/1 204 269 .. 1 87 [] 77.1 1.2e-21
FM954972_2380 1/1 459 527 .. 1 87 [] 75.6 3.1e-21
FM954972_0517 1/1 205 272 .. 1 87 [] 75.5 3.3e-21
FM954972_1062 1/1 800 865 .. 1 87 [] 73.3 1.5e-20
FM954972_0427 1/1 282 347 .. 1 87 [] 68.7 2.8e-19
FM954972_0095 1/1 139 204 .. 1 87 [] 57.1 5.5e-16
FM954972_1043 1/1 223 288 .. 1 87 [] 54.5 3e-15
FM954972_2770 1/1 795 860 .. 1 87 [] 54.3 3.6e-15
FM954972_0734 1/1 125 191 .. 1 87 [] 54.2 3.8e-15
FM954972_2090 1/1 372 440 .. 1 87 [] 46.7 4.9e-13
FM954972_0132 2/2 222 282 .. 1 87 [] 46.6 5.4e-13
FM954972_2750 1/1 242 304 .. 1 87 [] 44.7 1.9e-12
FM954972_1402 1/1 445 512 .. 1 87 [] 41.9 1.2e-11

Alignments of top-scoring domains:
FM954972_2478: domain 1 of 1, from 290 to 355: score 97.0, E = 2.7e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ t+ls q
FM954972_2 290 VKSEFLANMSHELRTPLNGVIGFTRQMLK---------THLSNSQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll++ind+Ld+s++eag
FM954972_2 326 ----------TDYLQTIERSANNLLSIINDILDFSKLEAG 355

FM954972_1037: domain 1 of 1, from 342 to 407: score 90.2, E = 2.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla+lsHE+RTP+++++g+a++Ll+ t+ls eq
FM954972_1 342 AKTAFLATLSHEIRTPMNGVLGTAQILLK---------TPLSTEQ-- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++++++++ L+n++Ld+s+ie+g
FM954972_1 378 ----------EKHLKSLYDSGDHMMTLLNEILDFSKIEQG 407

FM954972_1220: domain 1 of 1, from 479 to 544: score 87.2, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g++ l+l+ t+l+ q
FM954972_1 479 AKSDFLANMSHEIRTPMNAIIGMSYLALK---------TDLTKAQ-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+++++ +++ ll Lind+Ld+s+ieag
FM954972_1 515 ----------RNYIHKVKLSSDTLLGLINDILDFSKIEAG 544

FM954972_1361: domain 1 of 1, from 209 to 274: score 84.5, E = 9.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTPL+a +g++++L+ t+l++eq
FM954972_1 209 AKSEFLAMMSHELRTPLNATIGLIDTLKS---------TPLNDEQ-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l + ++e ll++i+d+Ld+s+ie+g
FM954972_1 245 ----------QSILLNMSTSSELLLAIISDVLDFSKIESG 274

FM954972_0874: domain 1 of 1, from 721 to 786: score 83.0, E = 2.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE RTP+++I+g++el++e + lsee
FM954972_0 721 AKSQFLATISHEVRTPISGILGLLELMQE---------HQLSEEL-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++a+ ll+++nd+Ld+s+ieag
FM954972_0 757 ----------LNLHGGLNQSARNLLHIVNDVLDYSKIEAG 786

FM954972_1702: domain 1 of 1, from 204 to 269: score 77.1, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a++ HELRTPL++++g ael+ + tels q
FM954972_1 204 ATRDFVAMINHELRTPLNGLLGSAELISD---------TELSNSQ-- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ + +++e l+ +indlLd+s+i ag
FM954972_1 240 ----------REIVNNLSQSGEFLRTIINDLLDYSKINAG 269

FM954972_2380: domain 1 of 1, from 459 to 527: score 75.6, E = 3.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla+ sHELRTPL+++ g ae+L +++ ++ ++ q
FM954972_2 459 LKDEFLATTSHELRTPLHGMVGIAEALISGAN------GPIPANQ-- 497

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++++rl L++dlLd+ +++ g
FM954972_2 498 ----------KYQLDIIINSGQRLATLVDDLLDYHKMRYG 527

FM954972_0517: domain 1 of 1, from 205 to 272: score 75.5, E = 3.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+++gy+e+ ++ +++
FM954972_0 205 MRRNFFANVSHELRTPMTVLQGYLEMTED---------PDMVVGP-- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ ++ ++++r+++L+n+lL+ls+iea
FM954972_0 241 --------MWPKAHGVMTEQLNRMNSLVNQLLTLSKIEAA 272

FM954972_1062: domain 1 of 1, from 800 to 865: score 73.3, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL +I ++el + e + e
FM954972_1 800 AKSRFLANMSHEIRTPLGGIVSLLELSEQ---------YEVGYEV-- 835

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ t+ ++a+ ll+++nd+Ld+s+ieag
FM954972_1 836 ----------QKIHTTLSQSANNLLHIVNDILDFSKIEAG 865

FM954972_0427: domain 1 of 1, from 282 to 347: score 68.7, E = 2.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I+g++ +Ll+ + l+ eq
FM954972_0 282 DKTTFISTISHELRTPLNGIIGLSRMLLD---------SQLTTEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +ti+ +a l ++ nd+ d+ + +
FM954972_0 318 ----------RKQMQTIKVSAVTLGNIFNDIIDMDKFDRR 347

FM954972_0095: domain 1 of 1, from 139 to 204: score 57.1, E = 5.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++l+HE+++PL ++rg+a+lL + l+++ +
FM954972_0 139 AAKLLVRGLAHEIKNPLGGLRGAAQLLGK----------MLPDQSL- 174

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL + ++
FM954972_0 175 ----------NEYTQIIIEQADRLRALVDRLLGPQKPGTK 204

FM954972_1043: domain 1 of 1, from 223 to 288: score 54.5, E = 3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+++ sHELRTPLt+ rg+ +lLl+ +e +e q
FM954972_1 223 REQAFARYSSHELRTPLTVARGANKLLLR---------SETTEFQ-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +i++++ +++++++ lL l r e +
FM954972_1 259 ----------SRQVARIDEAIVQMSEMVDALLGLVRYERN 288

FM954972_2770: domain 1 of 1, from 795 to 860: score 54.3, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+L +PL+a r++a+ L e ++ e+
FM954972_2 795 SKSRFLAAVSHDLMQPLNAARLFASSLSE---------VAKEQEE-- 830

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i++++ ++Li dlLd+sr+e+g
FM954972_2 831 ----------KQLSSHIESALGAAEDLIGDLLDISRLESG 860

FM954972_0734: domain 1 of 1, from 125 to 191: score 54.2, E = 3.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+ RTPL++ ++ya+ L + ++l++ ++
FM954972_0 125 SLGRMVASLAHQVRTPLSSAMLYASNLAA---------PNLPPATK- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l++++nd+L +++ + +
FM954972_0 162 ----------TRFQSKLMDRLHDLEKQVNDMLLFAKGGDN 191

FM954972_2090: domain 1 of 1, from 372 to 440: score 46.7, E = 4.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ a++sHEL++PL+aIr ya+ + +l e++e
FM954972_2 372 VLGQMSASISHELNNPLAAIRSYADNGRLFLA------KEKTERV-- 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i ++r+ ++ +l+ +++ +
FM954972_2 411 ----------DDNLSRISALTDRMAKISHQLRSFAKKSTA 440

FM954972_0132: domain 2 of 2, from 222 to 282: score 46.6, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e+
FM954972_0 222 DRALLMAGISHDLRTPLTRIRLATEMMSP--------------ED-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e i++++e ++++i++++d+ +
FM954972_0 253 ----------SYLAEGIISDTEECNEIISQFMDYLKPVDR 282

FM954972_2750: domain 1 of 1, from 242 to 304: score 44.7, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELR PLt +r++ l+ + +++e q
FM954972_2 242 GQQRLLSDISHELRSPLTRLRMANALAIR----------KQGESQE- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++i++lL+lsr++
FM954972_2 278 -------------LERIDMEAQRLEQMISELLTLSRMQVD 304

FM954972_1402: domain 1 of 1, from 445 to 512: score 41.9, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g++el++ el++e ++
FM954972_1 445 ALGELTAGIAHEINNPTAVILGNVELMKF----------ELGDEVAR 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++ i ++++r++++ + lL++sr +
FM954972_1 482 ---------VDEEVHAIMEQIDRIRNITRSLLQYSRHGGV 512


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 2 0|=
-14 9 0|=
-13 54 2|*=====
-12 146 67|=======*=========
-11 302 349|================================== *
-10 527 647|==========================================================*
-9 521 669|==========================================================*
-8 460 500|==================================================== *
-7 361 315|==================================*======
-6 223 181|====================*====
-5 125 99|==========*===
-4 81 53|=====*===
-3 49 28|===*==
-2 22 14|=*=
-1 15 7|*=
0 12 4|*=
1 2 2|*
2 5 1|*
3 2 0|=
4 1 0|=
5 2 0|=
6 1 0|=
7 0 0|
8 0 0|
> 9 24 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 219.3967
P(chi-square) = 1.306e-310

Total sequences searched: 2950

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: