hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: FM954972.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM954972_1812 CDS_2055309-2053954 52.8 2e-15 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM954972_1812 1/1 250 315 .. 1 70 [] 52.8 2e-15
Alignments of top-scoring domains:
FM954972_1812: domain 1 of 1, from 250 to 315: score 52.8, E = 2e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
E +++ARELHD++ Q L + + +lel+ l +++ ++ +l
FM954972_1 250 EKKHLARELHDGINQLLVSSRCHLELLGNKL--QSE--DLKVHLNKS 292
relarealaevRrllgdLRpaal<-*
++ + +a++evR++ ++LRp+ l
FM954972_1 293 QHSLMRAIEEVRHISHQLRPSSL 315
Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 26 0|===
-13 101 0|=========
-12 133 32|==*=========
-11 212 270|================== *
-10 580 626|================================================= *
-9 651 711|======================================================= *
-8 402 548|================================== *
-7 305 344|========================== *
-6 176 195|=============== *
-5 159 104|========*=====
-4 92 54|====*===
-3 53 28|==*==
-2 22 14|=*
-1 14 7|*=
0 7 3|*
1 7 1|*
2 1 0|=
> 3 5 -|=
% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 457.1005
P(chi-square) = 0
Total sequences searched: 2950
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
