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2 accessions found for Vibrio splendidus LGP32  

Data for FM954973  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM954973.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM954973_0841 CDS_962514-965717 102.4 4.1e-29 1
FM954973_0341 CDS_392204-393817 95.1 4.9e-27 1
FM954973_1478 CDS_1667572-1665146 94.5 7.1e-27 1
FM954973_1028 CDS_1187730-1184698 89.0 2.6e-25 1
FM954973_0349 CDS_398195-400780 85.2 3.1e-24 1
FM954973_1040 CDS_1204487-1199421 82.6 1.7e-23 1
FM954973_0654 CDS_742605-743990 62.9 6.6e-18 1
FM954973_0041 CDS_53826-52507 60.7 2.7e-17 1
FM954973_0578 CDS_661168-659861 50.6 2e-14 1
FM954973_1018 CDS_1174209-1175501 43.7 1.7e-12 1
FM954973_1429 CDS_1610459-1609173 42.7 3.4e-12 1
FM954973_0565 CDS_647788-649161 41.8 6e-12 1
FM954973_1155 CDS_1325668-1324319 32.3 3e-09 1
FM954973_0821 CDS_918884-920293 31.5 5e-09 1
FM954973_0713 CDS_800804-802276 29.0 2.6e-08 1
FM954973_0255 CDS_300869-298191 28.3 4.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM954973_0841 1/1 402 467 .. 1 87 [] 102.4 4.1e-29
FM954973_0341 1/1 44 109 .. 1 87 [] 95.1 4.9e-27
FM954973_1478 1/1 242 307 .. 1 87 [] 94.5 7.1e-27
FM954973_1028 1/1 469 534 .. 1 87 [] 89.0 2.6e-25
FM954973_0349 1/1 482 547 .. 1 87 [] 85.2 3.1e-24
FM954973_1040 1/1 1088 1153 .. 1 87 [] 82.6 1.7e-23
FM954973_0654 1/1 237 301 .. 1 87 [] 62.9 6.6e-18
FM954973_0041 1/1 212 277 .. 1 87 [] 60.7 2.7e-17
FM954973_0578 1/1 232 297 .. 1 87 [] 50.6 2e-14
FM954973_1018 1/1 233 300 .. 1 87 [] 43.7 1.7e-12
FM954973_1429 1/1 214 280 .. 1 87 [] 42.7 3.4e-12
FM954973_0565 1/1 257 320 .. 1 87 [] 41.8 6e-12
FM954973_1155 1/1 231 292 .. 1 84 [. 32.3 3e-09
FM954973_0821 1/1 261 318 .. 1 77 [. 31.5 5e-09
FM954973_0713 1/1 282 349 .. 1 87 [] 29.0 2.6e-08
FM954973_0255 1/1 467 536 .. 1 87 [] 28.3 4.2e-08

Alignments of top-scoring domains:
FM954973_0841: domain 1 of 1, from 402 to 467: score 102.4, E = 4.1e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++++g +e+L + t+l++ q
FM954973_0 402 AKSSFLANMSHEIRTPLNGVIGISEILSD---------TPLTPTQ-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+ +++ ll+Lind+Ld+s+ie+g
FM954973_0 438 ----------RDYVDTIETSSQLLLSLINDILDFSKIESG 467

FM954973_0341: domain 1 of 1, from 44 to 109: score 95.1, E = 4.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTPL++I+g+ae+L + ls+ q
FM954973_0 44 AKSAFLANMSHEIRTPLNGIIGMAEILSQ---------SQLSANQ-- 79

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e le i++++++ll L+nd+Ldls+ie+g
FM954973_0 80 ----------QEVLEDIESSSHSLLVLLNDILDLSKIESG 109

FM954973_1478: domain 1 of 1, from 242 to 307: score 94.5, E = 7.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP+++I+g+++lL e +++ eq
FM954973_1 242 NKSEFLANMSHEIRTPMNGIIGLSSLLSE---------MDMPKEQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey++ + ++ ll+Lind+Ld+s+ieag
FM954973_1 278 ----------KEYVDMLNTSSLTLLDLINDILDYSKIEAG 307

FM954973_1028: domain 1 of 1, from 469 to 534: score 89.0, E = 2.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++g+a lL++ t l++ q
FM954973_1 469 AKSAFLATMSHEIRTPMNGVLGTARLLKD---------TGLDPLQ-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++i r+++ ll+++nd+Ld+s+ieag
FM954973_1 505 ----------SGYADIINRSGKNLLAILNDVLDYSKIEAG 534

FM954973_0349: domain 1 of 1, from 482 to 547: score 85.2, E = 3.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla +sHE+RTPL++I+g ++lL++ + +e+
FM954973_0 482 VRADFLAKMSHEIRTPLNGILGVSQLLKR---------SIHDEDN-- 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ++++ ++ae+ll+ +nd+Ld+s+ie+g
FM954973_0 518 ----------RDQVDVLCHSAEHLLAVLNDILDFSKIEQG 547

FM954973_1040: domain 1 of 1, from 1088 to 1153: score 82.6, E = 1.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTP++aI+g++ l+ + ++
FM954973_1 1088 AKSEFLANMSHEIRTPMNAIIGLSYLAIG---------EISNPVA-- 1123

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e+++r++++ll++ind+Ld+s+ieag
FM954973_1 1124 ----------RNYIEKVHRSGHSLLSIINDILDFSKIEAG 1153

FM954973_0654: domain 1 of 1, from 237 to 301: score 62.9, E = 6.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sHELRTPL+ ++++lL+ + +e+
FM954973_0 237 KQRRLIRDVSHELRTPLARQNLALHLLRS----------KVDEKS-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le++++e+e +++L+ ++L++sr+e+
FM954973_0 272 ----------MGLLERMESETEEMNKLVGEILEFSRLETS 301

FM954973_0041: domain 1 of 1, from 212 to 277: score 60.7, E = 2.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HELRTP+ I+ ae+L++ t l+ eq
FM954973_0 212 SNRSLTNAVAHELRTPIFRIQWQAEMLKD---------TLLNKEQ-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+i +++e +++++++lL ++++++
FM954973_0 248 ----------QDTIESIVEDTEEMEKMVDELLYYAKLDSC 277

FM954973_0578: domain 1 of 1, from 232 to 297: score 50.6, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++fl+++sHELRTP++ Ir++ e+L++ l+++
FM954973_0 232 REQRFLSHASHELRTPIAIIRANMEILER---------ISLPSDL-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r++ ++++ + +L l r +
FM954973_0 268 ----------QRPINRIDRASSNMQQITETMLWLVRKSET 297

FM954973_1018: domain 1 of 1, from 233 to 300: score 43.7, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s fl+++sHELRTP+++I++ ++L + ++++ ++ q
FM954973_1 233 RESFFLRAASHELRTPIATISASGDMLVR------LSESIPNSGQ-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i+r+a + +L+ lL +sr +
FM954973_1 272 -----------RAVARIQRSASNMKALVTTLLWMSRNSEI 300

FM954973_1429: domain 1 of 1, from 214 to 280: score 42.7, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +++H++RTP++ +++ +e l d++l++e+
FM954973_1 214 SLKSLTVGMAHDMRTPMARLKLRLEEVLS--------DSTLTDEH-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ ++e+e +l+L n +L+++++ +g
FM954973_1 251 ----------QEQFSACHDELELILSLFNSMLEITKLNSG 280

FM954973_0565: domain 1 of 1, from 257 to 320: score 41.8, E = 6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l lsH+L+TPL++++gy+e+ + ++++
FM954973_0 257 HRRQSLLQLSHDLKTPLSSVLGYLETWKI-----------QNPKS-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++r ++ l++++ lLd ++ +++
FM954973_0 291 ----------DPLIDVAYRNGNKLSEQLHSLLDSAKNDNP 320

FM954973_1155: domain 1 of 1, from 231 to 292: score 32.3, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+ ++ HE RTPL+ I+++++lL++ e++e +
FM954973_1 231 QSHIFAQAIPHEVRTPLSRIQLATDLLRR----------EAPEHH-- 265

peLRledpeyreyletilreaerllrLindlLdlsri<-*
+ +++ i+ + +++L +++ ls++
FM954973_1 266 ----------QVFFDDIDTYIGDINDLTSEIIMLSKL 292

FM954973_0821: domain 1 of 1, from 261 to 318: score 31.5, E = 5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l l HELRTP+t++ +++e+ ++++ ++ ++e+
FM954973_0 261 ERQFVLQLLTHELRTPITSLGLTVEMFRNRY-------DDFPDET-- 298

peLRledpeyreyletilreaerllrLind<-*
+ ++ +++++ +rl++L ++
FM954973_0 299 ----------QGAVWRLISDYQRLSQLTEN 318

FM954973_0713: domain 1 of 1, from 282 to 349: score 29.0, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l l HELRTP++++++++e ++e+ ++l+e
FM954973_0 282 SRMLVLQILTHELRTPIASLSLTVEGFRREF-------EHLPESV-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ ++++rl++L + d+ + +++
FM954973_0 320 ----------YDEFRRLCEDTRRLRQLAEASKDYLQSDNQ 349

FM954973_0255: domain 1 of 1, from 467 to 536: score 28.3, E = 4.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HE+R+PL+ ++++ e+L+ ++d ++ +q+
FM954973_0 467 QSRALANSIAHEMRNPLAQVQLHFEVLKQ------HIDNQAPTQQI- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++r ++Li+ +L ++
FM954973_0 507 ----------LTDIENGQAAIQRGRQLIDIILREVSDSSP 536


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 7 0|==
-13 29 1|*=====
-12 71 33|======*========
-11 161 176|================================= *
-10 264 326|===================================================== *
-9 280 337|======================================================== *
-8 230 252|============================================== *
-7 183 159|===============================*=====
-6 96 91|==================*=
-5 66 50|=========*====
-4 33 26|=====*=
-3 24 14|==*==
-2 9 7|=*
-1 8 3|*=
0 3 2|*
1 1 1|*
> 2 19 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 82.6647
P(chi-square) = 1.505e-13

Total sequences searched: 1486

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: