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Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Vibrio splendidus LGP32  

Data for FM954973  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: FM954973.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM954973_0590 CDS_674374-676104 74.5 4.3e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM954973_0590 1/1 367 439 .. 1 70 [] 74.5 4.3e-22

Alignments of top-scoring domains:
FM954973_0590: domain 1 of 1, from 367 to 439: score 74.5, E = 4.3e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.....eare
ERa IARELHDs++QsLs +k+q+ l++r++ k pe++++++ ++
FM954973_0 367 ERATIARELHDSLAQSLSYLKIQVTLLKRVI--GKLPEhkhreQSEQ 411

aldeirelarealaevRrllgdLRpaal<-*
+ ei + a++++R+ll+++R ++
FM954973_0 412 IASEIGNGLAGAYTQLRELLTTFRLSIK 439


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 25 0|=====
-13 62 0|===========
-12 85 16|==*============
-11 99 136|================= *
-10 301 315|=================================================== *
-9 321 358|====================================================== *
-8 211 276|==================================== *
-7 152 173|========================== *
-6 79 98|============== *
-5 67 52|========*===
-4 37 27|====*==
-3 16 14|==*
-2 5 7|=*
-1 13 3|*==
0 3 1|*
1 3 0|=
> 2 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 326.9616
P(chi-square) = 0

Total sequences searched: 1486

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: