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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

1 accessions found for Neisseria meningitidis 8013  

Data for FM999788  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FM999788.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FM999788_1739 CDS_1863028-1861778 55.8 9.3e-16 1
FM999788_1635 CDS_1749056-1750462 44.8 1.3e-12 1
FM999788_0108 CDS_119789-121909 36.9 2.1e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FM999788_1739 1/1 193 258 .. 1 87 [] 55.8 9.3e-16
FM999788_1635 1/1 236 299 .. 1 87 [] 44.8 1.3e-12
FM999788_0108 1/1 483 555 .. 1 87 [] 36.9 2.1e-10

Alignments of top-scoring domains:
FM999788_1739: domain 1 of 1, from 193 to 258: score 55.8, E = 9.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a+++HELRTP+ta+++ ae L + l+++
FM999788_1 193 HRQRFVADAAHELRTPMTALSLQAERLNN---------MSLPPDA-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++++r +L+++lL l+r ++
FM999788_1 229 ----------ARQSAVLQQSIRRNKHLLEQLLALARSQSD 258

FM999788_1635: domain 1 of 1, from 236 to 299: score 44.8, E = 1.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sHE+R PL+ +++ + l+++ ++ +q
FM999788_1 236 KERHLLHHVSHEMRSPLARMQAIVGLIQA-----------QPQKQ-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ e+ r++ L +lL+lsr+e+
FM999788_1 270 ----------EQYLKRLEGELTRMDTLAGELLTLSRLETS 299

FM999788_0108: domain 1 of 1, from 483 to 555: score 36.9, E = 2.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e + l+HE+R+PLt I++ ae L +l ++l+e++++
FM999788_0 483 AWGEVAKRLAHEIRNPLTPIQLSAERLAWKLG------GKLDEQDAQ 523

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti +++ l ++++ ++ ++r +
FM999788_0 524 IL--------TRSTDTIVKQVAALKEMVEAFRNYARSPSL 555


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 4 0|=
-13 33 1|*====
-12 116 43|======*==========
-11 204 226|============================== *
-10 353 420|=================================================== *
-9 368 434|===================================================== *
-8 309 325|============================================= *
-7 215 204|=============================*=
-6 136 117|================*===
-5 63 64|=========*
-4 47 34|====*==
-3 37 18|==*===
-2 8 9|=*
-1 9 5|*=
0 2 2|*
1 3 1|*
2 0 0|
3 0 0|
4 1 0|=
5 0 0|
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 173.8893
P(chi-square) = 1.866e-31

Total sequences searched: 2126

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: