Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

5 accessions found for Erwinia pyrifoliae DSM 12163  

Data for FN392235  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN392235.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN392235_3078 CDS_3124729-3127503 95.6 9.4e-27 1
FN392235_2887 CDS_2939807-2938473 89.7 4.3e-25 1
FN392235_1370 CDS_1488308-1491286 78.3 7.6e-22 1
FN392235_0336 CDS_395283-397622 72.2 3.9e-20 1
FN392235_1080 CDS_1171045-1172484 69.3 2.5e-19 1
FN392235_0108 CDS_122895-121468 67.6 7.9e-19 1
FN392235_0030 CDS_50793-49744 60.3 9.1e-17 1
FN392235_1216 CDS_1326166-1327527 58.3 3.4e-16 1
FN392235_1466 CDS_1574127-1572742 56.1 1.5e-15 1
FN392235_3687 CDS_3734981-3733590 55.1 2.8e-15 1
FN392235_3838 CDS_3887855-3885156 52.9 1.2e-14 1
FN392235_1871 CDS_1977621-1976341 47.5 3.9e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN392235_3078 1/1 307 372 .. 1 87 [] 95.6 9.4e-27
FN392235_2887 1/1 203 269 .. 1 87 [] 89.7 4.3e-25
FN392235_1370 1/1 511 576 .. 1 87 [] 78.3 7.6e-22
FN392235_0336 1/1 282 347 .. 1 87 [] 72.2 3.9e-20
FN392235_1080 1/1 249 317 .. 1 87 [] 69.3 2.5e-19
FN392235_0108 1/1 254 316 .. 1 87 [] 67.6 7.9e-19
FN392235_0030 1/1 129 186 .. 1 79 [. 60.3 9.1e-17
FN392235_1216 1/1 230 293 .. 1 87 [] 58.3 3.4e-16
FN392235_1466 1/1 239 303 .. 1 87 [] 56.1 1.5e-15
FN392235_3687 1/1 247 307 .. 1 87 [] 55.1 2.8e-15
FN392235_3838 1/1 661 728 .. 1 87 [] 52.9 1.2e-14
FN392235_1871 1/1 211 271 .. 1 87 [] 47.5 3.9e-13

Alignments of top-scoring domains:
FN392235_3078: domain 1 of 1, from 307 to 372: score 95.6, E = 9.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
FN392235_3 307 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TMLNSTQ-- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+r+a+ ll++ind+Ld+s++eag
FN392235_3 343 ----------RDYLHTIERSANNLLSIINDVLDFSKLEAG 372

FN392235_2887: domain 1 of 1, from 203 to 269: score 89.7, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l r
FN392235_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------PVLEGRLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++a+r+++L+ +lL+lsriea
FN392235_2 240 ----------DKALQTMQEQAKRMDSLVGQLLTLSRIEAA 269

FN392235_1370: domain 1 of 1, from 511 to 576: score 78.3, E = 7.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l++
FN392235_1 511 SKSMFLATVSHELRTPLYGIIGNLDLLKT---------KALPAGA-- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ll++i+d+Ld+s+ie++
FN392235_1 547 ----------DSLVTAMNNSSSLLLKIISDILDFSKIESE 576

FN392235_0336: domain 1 of 1, from 282 to 347: score 72.2, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l+ eq
FN392235_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDQEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
FN392235_0 318 ----------LKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

FN392235_1080: domain 1 of 1, from 249 to 317: score 69.3, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHE++TPL+++r +elL +++ ++l+++q
FN392235_1 249 QRHEFLRHISHEFKTPLASLREGTELLADQVA------GPLTADQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++++++++l+rLi++lLd+ r a
FN392235_1 288 ----------REVVSILDDSSRHLQRLIEQLLDYNRKLAD 317

FN392235_0108: domain 1 of 1, from 254 to 316: score 67.6, E = 7.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ l+++ + ++
FN392235_0 254 AQQRLLSDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+ +indlL lsr ++
FN392235_0 290 -------------LERIETEAQRLDGMINDLLVLSRTQHK 316

FN392235_0030: domain 1 of 1, from 129 to 186: score 60.3, E = 9.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
FN392235_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
FN392235_0 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

FN392235_1216: domain 1 of 1, from 230 to 293: score 58.3, E = 3.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l ++sHELR PL+ +++++ l++ t+ s
FN392235_1 230 AREELLHDVSHELRSPLARLQLATGLARQ---------TPGSV---- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+rl+++i +lL+lsr e++
FN392235_1 264 ----------SASLDRIDEEARRLDKMIGELLTLSRTEHQ 293

FN392235_1466: domain 1 of 1, from 239 to 303: score 56.1, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+ +rg +e++++++ el+++
FN392235_1 239 MRRAFMADISHELRTPLAIMRGELEAIQDGV-------RELTPQS-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++d+ +ls ++g
FN392235_1 277 -------------IISLQGEVATLTKLVDDVHQLSLSDEG 303

FN392235_3687: domain 1 of 1, from 247 to 307: score 55.1, E = 2.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
FN392235_3 247 DRTLLMAGVSHDLRTPLTRIRLATEMMAE---------QD------- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
FN392235_3 278 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 307

FN392235_3838: domain 1 of 1, from 661 to 728: score 52.9, E = 1.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g ae+L +l + +++
FN392235_3 661 LRNALLSALSHDLRTPLTVLFGQAEILTLDL-------ASENSPY-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ rL+n+lLd++r+++g
FN392235_3 699 ----------AAQASAMREQTLNTIRLVNNLLDMARLQSG 728

FN392235_1871: domain 1 of 1, from 211 to 271: score 47.5, E = 3.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + l++ +
FN392235_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LTDAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + r++ +l++Li+dlL+++r++ +
FN392235_1 245 -------------LAALNRDIGQLESLIEDLLTFARLDRP 271


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 6 0|=
-14 69 0|======
-13 146 2|*===========
-12 250 91|======*=============
-11 402 472|=============================== *
-10 636 876|================================================= *
-9 718 905|======================================================== *
-8 595 677|============================================== *
-7 440 427|================================*=
-6 304 245|==================*=====
-5 186 134|==========*====
-4 91 72|=====*=
-3 56 38|==*==
-2 28 19|=*=
-1 28 10|*==
0 4 5|*
1 3 2|*
2 4 1|*
3 3 0|=
4 1 0|=
5 0 0|
6 1 0|=
> 7 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 482.0136
P(chi-square) = 0

Total sequences searched: 3986

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: