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Classification of phyla is from NCBI page
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264 projects found  

4 accessions found for Cronobacter turicensis  

Data for FN543093  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN543093.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN543093_2154 CDS_2255401-2258034 104.9 2.3e-29 1
FN543093_3345 CDS_3495598-3498357 100.6 3.7e-28 1
FN543093_0976 CDS_1048852-1050165 86.1 4.9e-24 1
FN543093_2875 CDS_3004644-3002533 82.8 4.2e-23 1
FN543093_0369 CDS_420816-423155 80.2 2.2e-22 1
FN543093_3146 CDS_3286934-3285465 74.0 1.3e-20 1
FN543093_4114 CDS_4274681-4276054 64.5 6.4e-18 1
FN543093_2858 CDS_2980902-2982293 62.7 2.1e-17 2
FN543093_2774 CDS_2893179-2894606 62.3 2.8e-17 1
FN543093_4185 CDS_4349565-4350614 61.7 4e-17 1
FN543093_1311 CDS_1385781-1383097 58.0 4.6e-16 1
FN543093_4102 CDS_4266043-4264733 57.9 4.9e-16 1
FN543093_0625 CDS_673708-675183 57.8 5.2e-16 1
FN543093_3913 CDS_4061298-4059952 55.5 2.3e-15 1
FN543093_0397 CDS_443660-442641 51.3 3.5e-14 1
FN543093_2886 CDS_3019498-3018062 47.1 5.6e-13 1
FN543093_2023 CDS_2123897-2122605 42.2 1.3e-11 1
FN543093_1706 CDS_1802484-1801189 27.9 1.5e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN543093_2154 1/1 251 316 .. 1 87 [] 104.9 2.3e-29
FN543093_3345 1/1 292 357 .. 1 87 [] 100.6 3.7e-28
FN543093_0976 1/1 203 269 .. 1 87 [] 86.1 4.9e-24
FN543093_2875 1/1 224 289 .. 1 87 [] 82.8 4.2e-23
FN543093_0369 1/1 282 347 .. 1 87 [] 80.2 2.2e-22
FN543093_3146 1/1 260 328 .. 1 87 [] 74.0 1.3e-20
FN543093_4114 1/1 238 300 .. 1 87 [] 64.5 6.4e-18
FN543093_2774 1/1 248 312 .. 1 87 [] 62.3 2.8e-17
FN543093_4185 1/1 129 186 .. 1 79 [. 61.7 4e-17
FN543093_2858 2/2 242 307 .. 1 87 [] 61.5 4.4e-17
FN543093_1311 1/1 663 730 .. 1 87 [] 58.0 4.6e-16
FN543093_4102 1/1 221 287 .. 1 87 [] 57.9 4.9e-16
FN543093_0625 1/1 272 337 .. 1 87 [] 57.8 5.2e-16
FN543093_3913 1/1 233 293 .. 1 87 [] 55.5 2.3e-15
FN543093_0397 1/1 121 181 .. 1 87 [] 51.3 3.5e-14
FN543093_2886 1/1 246 311 .. 1 87 [] 47.1 5.6e-13
FN543093_2023 1/1 211 271 .. 1 87 [] 42.2 1.3e-11
FN543093_1706 1/1 197 260 .. 1 87 [] 27.9 1.5e-07

Alignments of top-scoring domains:
FN543093_2154: domain 1 of 1, from 251 to 316: score 104.9, E = 2.3e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP+++I+g+++l+l+ tel+ eq
FN543093_2 251 AKSAFLANMSHEIRTPMNGILGMTQLCLD---------TELNGEQ-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl+ + ++a++ll++i+d+Ld+s+ieag
FN543093_2 287 ----------REYLSLVMSSAQSLLHIIDDILDFSKIEAG 316

FN543093_3345: domain 1 of 1, from 292 to 357: score 100.6, E = 3.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ t+l++ q
FN543093_3 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TDLTPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
FN543093_3 328 ----------RDHLNTIERSANNLLSIINDVLDFSKLEAG 357

FN543093_0976: domain 1 of 1, from 203 to 269: score 86.1, E = 4.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l + r
FN543093_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMHE---------QTLEGPLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
FN543093_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

FN543093_2875: domain 1 of 1, from 224 to 289: score 82.8, E = 4.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +el+
FN543093_2 224 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------QELPKGV-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++ ll++i+d+Ld+s+ie++
FN543093_2 260 ----------DRLVTAMHNSSSLLLKIISDILDFSKIESE 289

FN543093_0369: domain 1 of 1, from 282 to 347: score 80.2, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+ls+eq
FN543093_0 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLSAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ +ie
FN543093_0 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKIERR 347

FN543093_3146: domain 1 of 1, from 260 to 328: score 74.0, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl+++sHEL+TPL+++r +elL +++ ++l++eq
FN543093_3 260 QRHQFLRHISHELKTPLASMREGTELLADQV------VGPLTAEQ-- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +e+++ +++ l+ Li++lLd+ r ag
FN543093_3 299 ----------REVVEILDTSSRNLQTLIEQLLDYNRKLAG 328

FN543093_4114: domain 1 of 1, from 238 to 300: score 64.5, E = 6.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPLt +++ + lL++ +++
FN543093_4 238 TQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
FN543093_4 274 -------------LERIETEAHRLDSMINDLLVMSRNQQK 300

FN543093_2774: domain 1 of 1, from 248 to 312: score 62.3, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e++++++ ++e
FN543093_2 248 MRQAFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
FN543093_2 286 -------------VASLQAEVGTLTKLVDDLHQLSLSDEG 312

FN543093_4185: domain 1 of 1, from 129 to 186: score 61.7, E = 4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
FN543093_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSR----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
FN543093_4 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

FN543093_2858: domain 2 of 2, from 242 to 307: score 61.5, E = 4.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+a+r ++e+L+ se q
FN543093_2 242 RERVFIADAAHELRTPLAAMRINVEALQS---------WVSSENQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l i+r+ r rL+n+lL + ea
FN543093_2 278 ----------QELLAGIIRSNSRAARLVNQLLLMMHSEAR 307

FN543093_1311: domain 1 of 1, from 663 to 730: score 58.0, E = 4.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
FN543093_1 663 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSKH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ + rL+n+lLd++ri++g
FN543093_1 701 ----------APQASEIRQHVLNTARLVNNLLDMARIQSG 730

FN543093_4102: domain 1 of 1, from 221 to 287: score 57.9, E = 4.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l ++s +
FN543093_4 221 RLTRFADDLAHELRTPVNILLGQNQVALQ---------RPRSVTE-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l ++e+e++ rLi+++L l+r++++
FN543093_4 257 ---------YQSLLAGNIEELEQMTRLIENILFLARADHQ 287

FN543093_0625: domain 1 of 1, from 272 to 337: score 57.8, E = 5.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL++Irg+ae+L+e ++ ++
FN543093_0 272 YIEQYVHALTHELKSPLAGIRGAAEILRE---------SPPPAVA-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + il++ r+++L++ lL +++e+
FN543093_0 308 ----------QRFCDNILEQNARMQALVEKLLHQAKLENR 337

FN543093_3913: domain 1 of 1, from 233 to 293: score 55.5, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
FN543093_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSE---------GD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
FN543093_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

FN543093_0397: domain 1 of 1, from 121 to 181: score 51.3, E = 3.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el++ +
FN543093_0 121 QERLFTADAAHELRTPLAGIRLHLELMEQSG---------------- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++rl + +++lL lsr+++
FN543093_0 152 ----------VSQATPLLARIDRLMHTVEQLLMLSRAGQA 181

FN543093_2886: domain 1 of 1, from 246 to 311: score 47.1, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPLt++++ a ++l+ ++ q
FN543093_2 246 RQERFSADASHQLKTPLTVLKTQAAVALA----------SPDPAQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re l+ + +++ +L ++lL+l+ ++
FN543093_2 281 ---------WRESLQAMSATLDQTIDLTERLLQLATLRRA 311

FN543093_2023: domain 1 of 1, from 211 to 271: score 42.2, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + ls+ +
FN543093_2 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LSASE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
FN543093_2 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

FN543093_1706: domain 1 of 1, from 197 to 260: score 27.9, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ l +l H L+TPL++++ ++ L++ ++ + eq+
FN543093_1 197 KYRTTLTDLTHSLKTPLSVLQSTLRSLRT---------GKTDVEQA- 233

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ r++++i L + +++g
FN543093_1 234 -------------EPVMLEQISRISQQIGYYLHRASMRSG 260


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 3 0|=
-14 32 0|===
-13 81 3|*======
-12 232 96|=======*==========
-11 433 499|================================== *
-10 703 926|======================================================= *
-9 767 956|==========================================================*
-8 682 716|===================================================== *
-7 523 451|==================================*======
-6 327 259|===================*======
-5 175 142|==========*===
-4 89 76|=====*=
-3 57 40|===*=
-2 28 21|=*=
-1 23 11|*=
0 17 5|*=
1 12 3|*
2 3 1|*
3 3 0|=
4 2 0|=
5 2 0|=
> 6 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 375.4940
P(chi-square) = 0

Total sequences searched: 4213

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: