Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

4 accessions found for Cronobacter turicensis  

Data for FN543096  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN543096.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN543096_0050 CDS_32027-30603 60.8 1.2e-18 1
FN543096_0069 CDS_48888-50126 59.2 3.6e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN543096_0050 1/1 255 321 .. 1 87 [] 60.8 1.2e-18
FN543096_0069 1/1 183 249 .. 1 87 [] 59.2 3.6e-18

Alignments of top-scoring domains:
FN543096_0050: domain 1 of 1, from 255 to 321: score 60.8, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f ++++HELRTP++ +++ ++ +l+ e++ +
FN543096_0 255 KLSDFSSDIAHELRTPVSNLMMQTQFALA---------KERDVSH-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l l+e++rl+r+ +d+L l+r e+g
FN543096_0 291 ---------YREILFANLEELKRLSRMTSDMLFLARSEHG 321

FN543096_0069: domain 1 of 1, from 183 to 249: score 59.2, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f a+++HE+RTP+t + + +e++l ++++ ++
FN543096_0 183 RQANFSADIAHEIRTPITNLVTQTEIALS---------QDRTQREL- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e +r+ ++++d+L l++++++
FN543096_0 220 ----------EDVLYSSLEEYNRMTKMVSDMLFLAQADNN 249


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 2 0|==
-13 4 0|====
-12 7 1|*======
-11 7 8|=======*
-10 17 16|===============*=
-9 12 16|============ *
-8 5 12|===== *
-7 9 7|======*==
-6 4 4|===*
-5 2 2|=*
-4 1 1|*
-3 1 0|=
> -2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 6.4775
P(chi-square) = 0.1662

Total sequences searched: 74

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: