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Classification of phyla is from NCBI page
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264 projects found  

4 accessions found for Citrobacter rodentium ICC168  

Data for FN543502  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN543502.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN543502_2983 CDS_3195868-3193112 97.1 4.4e-27 1
FN543502_2320 CDS_2473168-2470529 80.6 2.1e-22 1
FN543502_0446 CDS_495321-496628 79.2 5.2e-22 1
FN543502_4527 CDS_4867325-4869661 78.9 6.2e-22 1
FN543502_2464 CDS_2634940-2633447 71.1 1e-19 1
FN543502_2181 CDS_2318463-2319866 66.1 2.6e-18 1
FN543502_3765 CDS_4045236-4046609 65.7 3.5e-18 1
FN543502_3501 CDS_3758890-3760236 59.3 2.2e-16 1
FN543502_3818 CDS_4104548-4105597 59.0 2.7e-16 1
FN543502_0697 CDS_771477-768790 58.5 3.8e-16 1
FN543502_4980 CDS_5341655-5343079 58.5 3.8e-16 1
FN543502_3676 CDS_3941779-3940376 58.3 4.2e-16 1
FN543502_4938 CDS_5292624-5291272 54.3 5.7e-15 1
FN543502_4337 CDS_4673049-4674401 53.8 7.9e-15 1
FN543502_1440 CDS_1556199-1554913 46.9 7.1e-13 1
FN543502_3418 CDS_3677117-3676068 43.9 5.3e-12 1
FN543502_3098 CDS_3314010-3315422 37.4 3.5e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN543502_2983 1/1 292 357 .. 1 87 [] 97.1 4.4e-27
FN543502_2320 1/1 400 465 .. 1 87 [] 80.6 2.1e-22
FN543502_0446 1/1 203 269 .. 1 87 [] 79.2 5.2e-22
FN543502_4527 1/1 282 347 .. 1 87 [] 78.9 6.2e-22
FN543502_2464 1/1 270 338 .. 1 87 [] 71.1 1e-19
FN543502_2181 1/1 240 304 .. 1 87 [] 66.1 2.6e-18
FN543502_3765 1/1 238 300 .. 1 87 [] 65.7 3.5e-18
FN543502_3501 1/1 234 300 .. 1 87 [] 59.3 2.2e-16
FN543502_3818 1/1 129 186 .. 1 79 [. 59.0 2.7e-16
FN543502_0697 1/1 664 731 .. 1 87 [] 58.5 3.8e-16
FN543502_4980 1/1 255 320 .. 1 87 [] 58.5 3.8e-16
FN543502_3676 1/1 245 311 .. 1 87 [] 58.3 4.2e-16
FN543502_4938 1/1 236 302 .. 1 87 [] 54.3 5.7e-15
FN543502_4337 1/1 233 293 .. 1 87 [] 53.8 7.9e-15
FN543502_1440 1/1 211 271 .. 1 87 [] 46.9 7.1e-13
FN543502_3418 1/1 135 195 .. 1 87 [] 43.9 5.3e-12
FN543502_3098 1/1 246 311 .. 1 87 [] 37.4 3.5e-10

Alignments of top-scoring domains:
FN543502_2983: domain 1 of 1, from 292 to 357: score 97.1, E = 4.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel+ q
FN543502_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNTTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
FN543502_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

FN543502_2320: domain 1 of 1, from 400 to 465: score 80.6, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
FN543502_2 400 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
FN543502_2 436 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 465

FN543502_0446: domain 1 of 1, from 203 to 269: score 79.2, E = 5.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ e ++l +r
FN543502_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMHE---------QPLEGSTR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l t+++++ r++ L+ +lL+ls+iea
FN543502_0 240 ----------EKALLTMREQTFRMEGLVKQLLTLSKIEAS 269

FN543502_4527: domain 1 of 1, from 282 to 347: score 78.9, E = 6.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
FN543502_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
FN543502_4 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

FN543502_2464: domain 1 of 1, from 270 to 338: score 71.1, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
FN543502_2 270 QRHQFLRHLSHELKTPLASMREGTELLADGV------VGPLTPEQ-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++++++ l++Li++lLd+ r a
FN543502_2 309 ----------KEVVGILDDSSRNLQKLIEQLLDYNRKLAD 338

FN543502_2181: domain 1 of 1, from 240 to 304: score 66.1, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
FN543502_2 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
FN543502_2 278 -------------VASLQAEVATLTKLVDDLHQLSMSDEG 304

FN543502_3765: domain 1 of 1, from 238 to 300: score 65.7, E = 3.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPLt +++ + lL++ +++
FN543502_3 238 TQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
FN543502_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

FN543502_3501: domain 1 of 1, from 234 to 300: score 59.3, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ a++++ ++ +++ r
FN543502_3 234 RERRFTSDAAHELRSPLAALKVQADVAQL---------SDDDPQAR- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ ++r rL+++lL+lsr+++
FN543502_3 271 ----------AKALAQLHTGIDRATRLVDQLLTLSRLDSL 300

FN543502_3818: domain 1 of 1, from 129 to 186: score 59.0, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
FN543502_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
FN543502_3 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

FN543502_0697: domain 1 of 1, from 664 to 731: score 58.5, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++ +
FN543502_0 664 LRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSAH-- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++++ rL+n+lLd++ri++g
FN543502_0 702 ----------AKQASEIRQQILNTTRLVNNLLDMARIQSG 731

FN543502_4980: domain 1 of 1, from 255 to 320: score 58.5, E = 3.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+ae+L+e ++ ++
FN543502_4 255 YIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPPDIV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ il++ r++ L++ lL +r+e+
FN543502_4 291 ----------KRFTDNILSQNARMQMLVETLLRQARLENR 320

FN543502_3676: domain 1 of 1, from 245 to 311: score 58.3, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a e ++++ e
FN543502_3 245 ALGHLAAGVAHEIRNPLSSIKGLARYFAE--------RAPAEGEA-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ +ea+rl+r +++lL+l +
FN543502_3 282 ----------HQLAQVMAKEADRLNRVVSELLELVKPARL 311

FN543502_4938: domain 1 of 1, from 236 to 302: score 54.3, E = 5.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g+ +++l +++ e+
FN543502_4 236 RLNQFADDLAHELRTPVNILLGHNQVALS---------KARTTEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l ++e+e l+rL +++L l+r+e+
FN543502_4 272 ---------YQQTLANNIEELEGLSRLTENILFLARAEHH 302

FN543502_4337: domain 1 of 1, from 233 to 293: score 53.8, E = 7.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
FN543502_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
FN543502_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

FN543502_1440: domain 1 of 1, from 211 to 271: score 46.9, E = 7.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ lse++
FN543502_1 211 SKKQLTDGIAHELRTPLVRLRYRLEMSEN-----------LSEQE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + r++ +l++Li++lL+++r++ +
FN543502_1 245 -------------TQALNRDIGQLEALIEELLTYARLDRP 271

FN543502_3418: domain 1 of 1, from 135 to 195: score 43.9, E = 5.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + + + +
FN543502_3 135 NERLFTADVAHELRTPLAGVRLHLELLSK----------AHNIDV-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ + +++lL+l+r ++
FN543502_3 170 --------------APLVARLDQMMDSVSQLLQLARVGQS 195

FN543502_3098: domain 1 of 1, from 246 to 311: score 37.4, E = 3.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + ++q
FN543502_3 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SRQPQQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + ++ L ++lL+ls
FN543502_3 281 ---------WYESLQAMSATLDNTILLTERLLQLSAVKRK 311


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-16 1 0|=
-15 1 0|=
-14 25 0|==
-13 81 3|*=====
-12 224 109|======*=======
-11 506 568|================================ *
-10 799 1055|================================================== *
-9 897 1090|========================================================= *
-8 789 816|==================================================*
-7 581 514|================================*====
-6 364 295|==================*====
-5 239 162|==========*====
-4 134 86|=====*===
-3 53 45|==*=
-2 25 24|=*
-1 33 12|*==
0 14 6|*
1 5 3|*
2 6 1|*
3 2 0|=
4 1 0|=
5 1 0|=
6 0 0|
7 0 0|
> 8 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 352.0561
P(chi-square) = 0

Total sequences searched: 4984

Whole sequence top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 17
Satisfying E cutoff: 17
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: