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Classification of phyla is from NCBI page
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4 accessions found for Citrobacter rodentium ICC168  

Data for FN543502  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: FN543502.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN543502_1761 CDS_1894693-1896489 82.6 5.9e-24 1
FN543502_2384 CDS_2540782-2542488 75.9 5.2e-22 1
FN543502_3991 CDS_4302156-4303658 65.0 8.7e-19 1
FN543502_0412 CDS_460301-458754 64.2 1.6e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN543502_1761 1/1 390 458 .. 1 70 [] 82.6 5.9e-24
FN543502_2384 1/1 361 428 .. 1 70 [] 75.9 5.2e-22
FN543502_3991 1/1 304 370 .. 1 70 [] 65.0 8.7e-19
FN543502_0412 1/1 317 382 .. 1 70 [] 64.2 1.6e-18

Alignments of top-scoring domains:
FN543502_1761: domain 1 of 1, from 390 to 458: score 82.6, E = 5.9e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d+ pe re l +i
FN543502_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DTLPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
FN543502_1 435 RNELNASWAQLRELLTTFRlQLTE 458

FN543502_2384: domain 1 of 1, from 361 to 428: score 75.9, E = 5.2e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r + ++d+++a+ +d
FN543502_2 361 ERATIARELHDSLAQVLSYLRIQLALLKRSI--PEDNAPAQSIMDDF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
FN543502_2 406 SRALNDAYRQLRELLTTFRLTLQ 428

FN543502_3991: domain 1 of 1, from 304 to 370: score 65.0, E = 8.7e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ ++++ +++ + i
FN543502_3 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---AENGGVKQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
FN543502_3 348 EQLSLGVYDSVRRLLGRLRPRQL 370

FN543502_0412: domain 1 of 1, from 317 to 382: score 64.2, E = 1.6e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ +ARELHD++gQ+++ai +q++l++r ++dp++ ++a+ +i
FN543502_0 317 TRKSLARELHDEIGQNITAIQIQTQLVKR----ARDPAQTQAAASQI 359

relarealaevRrllgdLRpaal<-*
+lar+ +R+ll++LRp+al
FN543502_0 360 NDLARRIHHSTRQLLRQLRPPAL 382


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-16 2 0|=
-15 4 0|=
-14 27 0|==
-13 114 0|========
-12 185 53|===*========
-11 281 439|================== *
-10 735 1020|============================================== *
-9 916 1159|==========================================================*
-8 739 893|=============================================== *
-7 631 561|===================================*====
-6 396 317|===================*=====
-5 346 170|==========*===========
-4 165 88|=====*=====
-3 105 45|==*====
-2 62 23|=*==
-1 40 11|*==
0 25 6|*=
1 8 3|*
2 10 1|*
3 1 0|=
4 1 0|=
> 5 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1076.3093
P(chi-square) = 0

Total sequences searched: 4984

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: