Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

1 accessions found for Helicobacter mustelae 12198  

Data for FN555004  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN555004.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN555004_0341 CDS_404095-405360 39.4 2.8e-11 1
FN555004_1367 CDS_1506018-1504789 37.1 1.2e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN555004_0341 1/1 204 268 .. 1 87 [] 39.4 2.8e-11
FN555004_1367 1/1 208 269 .. 1 87 [] 37.1 1.2e-10

Alignments of top-scoring domains:
FN555004_0341: domain 1 of 1, from 204 to 268: score 39.4, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ a+l+HE+R+P+ +I+++a++Ll+ + +++
FN555004_0 204 AMGQISAHLAHEIRNPIGSISLLASTLLK----------KVDAPI-- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +++++ r +r+i L +sr +
FN555004_0 239 ----------KPIIFELQKSLYRVERQIKATLLFSRGLNI 268

FN555004_1367: domain 1 of 1, from 208 to 269: score 37.1, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HEL+TP++a+++ a L+++++
FN555004_1 208 LLDHFIKDITHELNTPISALLMSANSLKNGVN--------------- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+++ +r++ L n+l l eag
FN555004_1 240 ----------NRKLSRIEQACKRIEFLYNNLTFLFLGEAG 269


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 9 0|==
-13 15 1|*==
-12 56 31|======*=====
-11 183 165|================================*====
-10 209 307|========================================== *
-9 266 317|====================================================== *
-8 229 238|============================================== *
-7 170 150|=============================*====
-6 107 86|=================*====
-5 71 47|=========*=====
-4 39 25|====*===
-3 18 13|==*=
-2 9 7|=*
-1 7 3|*=
0 3 1|*
1 1 0|=
2 2 0|=
3 0 0|
> 4 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 89.2363
P(chi-square) = 7.589e-15

Total sequences searched: 1430

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: