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264 projects found  

2 accessions found for Legionella longbeachae NSW150  

Data for FN650140  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN650140.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN650140_1273 CDS_1462678-1459946 97.6 2.2e-27 1
FN650140_0710 CDS_785810-783390 90.7 2e-25 2
FN650140_3215 CDS_3585024-3582400 81.2 9.9e-23 1
FN650140_2498 CDS_2817325-2818995 68.7 3.5e-19 1
FN650140_3585 CDS_4062209-4059768 68.6 3.7e-19 1
FN650140_1838 CDS_2105812-2107182 51.7 2.3e-14 1
FN650140_1194 CDS_1367664-1366246 51.3 3e-14 1
FN650140_2589 CDS_2920206-2922494 48.9 1.4e-13 1
FN650140_2411 CDS_2723687-2722686 48.6 1.7e-13 1
FN650140_2891 CDS_3250870-3252138 37.3 2.9e-10 1
FN650140_0775 CDS_862034-860241 37.0 3.4e-10 2
FN650140_3458 CDS_3896747-3895500 27.6 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN650140_1273 1/1 296 361 .. 1 87 [] 97.6 2.2e-27
FN650140_3215 1/1 395 463 .. 1 87 [] 81.2 9.9e-23
FN650140_2498 1/1 177 242 .. 1 87 [] 68.7 3.5e-19
FN650140_3585 1/1 268 333 .. 1 87 [] 68.6 3.7e-19
FN650140_0710 1/2 192 258 .. 1 87 [] 65.5 2.9e-18
FN650140_1838 1/1 230 294 .. 1 87 [] 51.7 2.3e-14
FN650140_1194 1/1 246 311 .. 1 87 [] 51.3 3e-14
FN650140_2589 1/1 235 300 .. 1 87 [] 48.9 1.4e-13
FN650140_2411 1/1 123 189 .. 1 87 [] 48.6 1.7e-13
FN650140_2891 1/1 209 267 .. 1 87 [] 37.3 2.9e-10
FN650140_3458 1/1 190 258 .. 1 87 [] 27.6 1.6e-07

Alignments of top-scoring domains:
FN650140_1273: domain 1 of 1, from 296 to 361: score 97.6, E = 2.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+an+sHE+RTP+++++g++ +Lle ++l++ q
FN650140_1 296 QKSEFIANMSHEIRTPMNGVIGFTNVLLE---------SKLDPLQ-- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+++a+ ll +ind+Ld+s+i+ag
FN650140_1 332 ----------LDYVKTIKSSAQDLLGIINDILDFSKIDAG 361

FN650140_3215: domain 1 of 1, from 395 to 463: score 81.2, E = 9.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++++sHELRTPLt+Irg + lL ++ ++ +e+
FN650140_3 395 LKDEFVSTVSHELRTPLTSIRGSLGLLVS------GIMGAFPEKV-- 433

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++ +rll Lind+Ld+++ieag
FN650140_3 434 ----------KKLLDIANTNCDRLLLLINDILDIEKIEAG 463

FN650140_2498: domain 1 of 1, from 177 to 242: score 68.7, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+an+sH++ TPL++I g+++lL+e e+++e
FN650140_2 177 AKNEFIANMSHDIHTPLSGIVGMSKLLEE---------KEQNPER-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + i++++e+ll+L+n ++d+ ++
FN650140_2 213 ----------KQYARWIHESGEQLLELLNGVMDIVATDSL 242

FN650140_3585: domain 1 of 1, from 268 to 333: score 68.6, E = 3.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef+an+sH++RTPLt+++g++e+L++ +l+ + +
FN650140_3 268 AKTEFIANMSHDIRTPLTGVIGLSEILEK----------NLTNPLH- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++++++ll +in++L+ r+++
FN650140_3 304 ----------KEEAHLLYESGNQLLTMINEILEDVRAGSA 333

FN650140_0710: domain 1 of 2, from 192 to 258: score 65.5, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+an+sHELRTPL I+g ++ Ll d +ls+ q
FN650140_0 192 MKTQFFANISHELRTPLMLILGPIDSLLQ--------DKPLSSLQ-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i++ a l++ +ndlLd+++ +a
FN650140_0 229 ----------TKKLRLIKENALLLSKHVNDLLDIAKFDAA 258

FN650140_1838: domain 1 of 1, from 230 to 294: score 51.7, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+++l ++sHELR PL+ ++ ++el +++ +l + +
FN650140_1 230 SKERLLQDISHELRSPLARLQIAIELGRKKT-------NHLADGE-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ e rl++Li ++Ld++r+e
FN650140_1 268 -------------FNRMELECSRLNALITEILDFARLEKS 294

FN650140_1194: domain 1 of 1, from 246 to 311: score 51.3, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+++ a+++l ++ ee+
FN650140_1 246 REKRFAADAAHELRTPLAALKTQAQVALH---------SNDIEEK-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ +++r +++++lL++sr+ +
FN650140_1 282 ----------NQALQKLIASVNRSTHIVQQLLTMSRLVPE 311

FN650140_2589: domain 1 of 1, from 235 to 300: score 48.9, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+efl n++H++RTPLt+I g++++++e +++++
FN650140_2 235 AKTEFLENMRHDIRTPLTGIVGFSDIIKE---------EAQNPRI-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + + +++ ll+ +++L+ +g
FN650140_2 271 ----------KEYADNLVASSHALLDFMDEVLEAIHVSSG 300

FN650140_2411: domain 1 of 1, from 123 to 189: score 48.6, E = 1.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a l+H++RTPL++ ++y+e L + +l++ +
FN650140_2 123 SIGTMTAQLAHQIRTPLASAMLYTEHLNN--------LLDLDSRT-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ +++++i+dlL ++r +
FN650140_2 160 ----------QNWILRLQECHSSIEQQIQDLLLFARGTTI 189

FN650140_2891: domain 1 of 1, from 209 to 267: score 37.3, E = 2.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + ++sH+LRTPLt +++ ae L++
FN650140_2 209 NRTRVVTAISHDLRTPLTRLKLRAEYLEN------------------ 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i +++ ++ +i++ Ld+ r +
FN650140_2 238 ----------DPNYNKIMADINEMELMIRETLDYFRDINV 267

FN650140_3458: domain 1 of 1, from 190 to 258: score 27.6, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ sH+L+ PL aI+ +a ++e+ ++l+e+
FN650140_3 190 ELEQFAYITSHDLKAPLRAIQRLACWIEEDNK------DKLDEKS-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l +++ + rl +Li+ +L++sr++
FN650140_3 229 ----------KENLMLLRKRSIRLAKLIDGILQYSRAGRV 258


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 3 0|=
-14 18 0|==
-13 57 2|*=====
-12 183 77|======*==========
-11 365 403|================================== *
-10 562 748|==================================================== *
-9 611 772|======================================================== *
-8 590 578|====================================================*=
-7 354 364|=================================*
-6 272 209|==================*======
-5 141 115|==========*==
-4 92 61|=====*===
-3 52 32|==*==
-2 42 17|=*==
-1 22 8|*=
0 10 4|*
1 6 2|*
2 4 1|*
3 4 0|=
4 0 0|
5 1 0|=
> 6 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 333.2271
P(chi-square) = 0

Total sequences searched: 3594

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: