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264 projects found  

3 accessions found for Erwinia amylovora ATCC 49946  

Data for FN666575  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FN666575.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FN666575_2707 CDS_2949895-2952624 97.0 3.3e-27 1
FN666575_0950 CDS_1056577-1057890 90.2 2.7e-25 1
FN666575_2262 CDS_2445610-2442740 78.3 6.7e-22 1
FN666575_2500 CDS_2734550-2733111 73.0 2.1e-20 1
FN666575_3109 CDS_3401879-3399540 71.1 7.2e-20 1
FN666575_0099 CDS_128687-127308 67.6 6.9e-19 1
FN666575_0031 CDS_58797-57748 60.9 5.4e-17 1
FN666575_2393 CDS_2595343-2593979 60.3 8.1e-17 1
FN666575_2185 CDS_2353457-2354842 56.1 1.3e-15 1
FN666575_3251 CDS_3539487-3538138 55.1 2.4e-15 1
FN666575_3355 CDS_3661022-3658344 53.9 5.3e-15 1
FN666575_3083 CDS_3379013-3380068 46.9 5.3e-13 1
FN666575_1802 CDS_1940603-1941883 42.0 1.3e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FN666575_2707 1/1 292 357 .. 1 87 [] 97.0 3.3e-27
FN666575_0950 1/1 203 269 .. 1 87 [] 90.2 2.7e-25
FN666575_2262 1/1 471 536 .. 1 87 [] 78.3 6.7e-22
FN666575_2500 1/1 249 317 .. 1 87 [] 73.0 2.1e-20
FN666575_3109 1/1 282 347 .. 1 87 [] 71.1 7.2e-20
FN666575_0099 1/1 238 300 .. 1 87 [] 67.6 6.9e-19
FN666575_0031 1/1 129 186 .. 1 79 [. 60.9 5.4e-17
FN666575_2393 1/1 230 293 .. 1 87 [] 60.3 8.1e-17
FN666575_2185 1/1 239 303 .. 1 87 [] 56.1 1.3e-15
FN666575_3251 1/1 233 293 .. 1 87 [] 55.1 2.4e-15
FN666575_3355 1/1 661 728 .. 1 87 [] 53.9 5.3e-15
FN666575_3083 1/1 136 196 .. 1 87 [] 46.9 5.3e-13
FN666575_1802 1/1 211 271 .. 1 87 [] 42.0 1.3e-11

Alignments of top-scoring domains:
FN666575_2707: domain 1 of 1, from 292 to 357: score 97.0, E = 3.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l++ q
FN666575_2 292 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TTLNSTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+r+a+ ll++ind+Ld+s++eag
FN666575_2 328 ----------RDYLHTIERSANNLLSIINDVLDFSKLEAG 357

FN666575_0950: domain 1 of 1, from 203 to 269: score 90.2, E = 2.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l r
FN666575_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------PVLEGRLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++a+r+++L+ +lL+lsriea
FN666575_0 240 ----------AKALQTMQEQAKRMDSLVGQLLTLSRIEAA 269

FN666575_2262: domain 1 of 1, from 471 to 536: score 78.3, E = 6.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l++
FN666575_2 471 SKSMFLATVSHELRTPLYGIIGNLDLLKT---------KALPAGA-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ll++i+d+Ld+s+ie++
FN666575_2 507 ----------DSLVTAMNNSSSLLLKIISDILDFSKIESE 536

FN666575_2500: domain 1 of 1, from 249 to 317: score 73.0, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +++ ++l+++q
FN666575_2 249 QRHEFLRHISHELKTPLASMREGTELLADQVA------GPLTADQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++++++++l+rLi++lLd+ r a+
FN666575_2 288 ----------REVVSILDDSSRHLQRLIEQLLDYNRKLAE 317

FN666575_3109: domain 1 of 1, from 282 to 347: score 71.1, E = 7.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ ++l+ eq
FN666575_3 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------SHLDQEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
FN666575_3 318 ----------LKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

FN666575_0099: domain 1 of 1, from 238 to 300: score 67.6, E = 6.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ l+++ + ++
FN666575_0 238 AQQRLLSDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+ +indlL lsr ++
FN666575_0 274 -------------LERIETEAQRLDGMINDLLVLSRTQHK 300

FN666575_0031: domain 1 of 1, from 129 to 186: score 60.9, E = 5.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
FN666575_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
FN666575_0 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

FN666575_2393: domain 1 of 1, from 230 to 293: score 60.3, E = 8.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l ++sHELR PL+ +++++ l++ t+ s +
FN666575_2 230 AREELLHDISHELRSPLARLQLATGLARQ---------TPGSVGAA- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+rl+++i +lL+lsr e++
FN666575_2 267 -------------LDRIDEEARRLDKMIGELLTLSRTEQQ 293

FN666575_2185: domain 1 of 1, from 239 to 303: score 56.1, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+ +rg +e++++++ el+++
FN666575_2 239 MRRAFMADISHELRTPLAIMRGELEAIQDGV-------RELTPQS-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++d+ +ls ++g
FN666575_2 277 -------------IISLQGEVATLTKLVDDVHQLSLSDEG 303

FN666575_3251: domain 1 of 1, from 233 to 293: score 55.1, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
FN666575_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMAE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
FN666575_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

FN666575_3355: domain 1 of 1, from 661 to 728: score 53.9, E = 5.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g ae+L +l + +++
FN666575_3 661 LRNALLSALSHDLRTPLTVLFGQAEILTLDL-------ASENSPY-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++ rL+n+lLd++r+++g
FN666575_3 699 ----------AAQASVMREQTLNTIRLVNNLLDMARLQSG 728

FN666575_3083: domain 1 of 1, from 136 to 196: score 46.9, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+++r+++elL+ ++ q
FN666575_3 136 QERLFTADAAHELRTPLAGLRLHLELLEQ-----------QGISQ-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l + i++lL l+r +++
FN666575_3 170 -------------CSVLVARIDQLMHVIEQLLMLARVGQE 196

FN666575_1802: domain 1 of 1, from 211 to 271: score 42.0, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + l++ +
FN666575_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LTDAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r++ +l++Li++lL+++r++ +
FN666575_1 245 -------------RVALNRDIGQLESLIEELLTFARLDRP 271


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 18 0|==
-13 79 2|*=======
-12 169 78|=======*========
-11 316 407|============================= *
-10 537 755|================================================= *
-9 645 780|==========================================================*
-8 574 584|=====================================================*
-7 419 368|=================================*=====
-6 278 211|===================*======
-5 181 116|==========*======
-4 86 62|=====*==
-3 48 32|==*==
-2 25 17|=*=
-1 25 9|*==
0 10 4|*
1 4 2|*
2 3 1|*
3 2 0|=
> 4 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 323.2020
P(chi-square) = 0

Total sequences searched: 3483

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: