Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

5 accessions found for Erwinia pyrifoliae Ep1/96  

Data for FP236842  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: FP236842.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
FP236842_2844 CDS_3124849-3127578 95.6 8.8e-27 1
FP236842_2662 CDS_2939745-2938411 89.7 4e-25 1
FP236842_1287 CDS_1488266-1491244 78.3 7.1e-22 1
FP236842_0324 CDS_395267-397606 72.2 3.7e-20 1
FP236842_1018 CDS_1171013-1172452 69.3 2.4e-19 1
FP236842_0105 CDS_122841-121462 67.6 7.3e-19 1
FP236842_0030 CDS_50790-49741 60.3 8.4e-17 1
FP236842_1141 CDS_1326129-1327490 58.3 3.1e-16 1
FP236842_1373 CDS_1574083-1572698 56.1 1.4e-15 1
FP236842_3427 CDS_3734989-3733640 55.1 2.6e-15 1
FP236842_3568 CDS_3887895-3885196 52.9 1.1e-14 1
FP236842_1740 CDS_1977570-1976290 47.5 3.6e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FP236842_2844 1/1 292 357 .. 1 87 [] 95.6 8.8e-27
FP236842_2662 1/1 203 269 .. 1 87 [] 89.7 4e-25
FP236842_1287 1/1 511 576 .. 1 87 [] 78.3 7.1e-22
FP236842_0324 1/1 282 347 .. 1 87 [] 72.2 3.7e-20
FP236842_1018 1/1 249 317 .. 1 87 [] 69.3 2.4e-19
FP236842_0105 1/1 238 300 .. 1 87 [] 67.6 7.3e-19
FP236842_0030 1/1 129 186 .. 1 79 [. 60.3 8.4e-17
FP236842_1141 1/1 230 293 .. 1 87 [] 58.3 3.1e-16
FP236842_1373 1/1 239 303 .. 1 87 [] 56.1 1.4e-15
FP236842_3427 1/1 233 293 .. 1 87 [] 55.1 2.6e-15
FP236842_3568 1/1 661 728 .. 1 87 [] 52.9 1.1e-14
FP236842_1740 1/1 211 271 .. 1 87 [] 47.5 3.6e-13

Alignments of top-scoring domains:
FP236842_2844: domain 1 of 1, from 292 to 357: score 95.6, E = 8.8e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l++ q
FP236842_2 292 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TMLNSTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ti+r+a+ ll++ind+Ld+s++eag
FP236842_2 328 ----------RDYLHTIERSANNLLSIINDVLDFSKLEAG 357

FP236842_2662: domain 1 of 1, from 203 to 269: score 89.7, E = 4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l r
FP236842_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------PVLEGRLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++a+r+++L+ +lL+lsriea
FP236842_2 240 ----------DKALQTMQEQAKRMDSLVGQLLTLSRIEAA 269

FP236842_1287: domain 1 of 1, from 511 to 576: score 78.3, E = 7.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l++
FP236842_1 511 SKSMFLATVSHELRTPLYGIIGNLDLLKT---------KALPAGA-- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +++ ll++i+d+Ld+s+ie++
FP236842_1 547 ----------DSLVTAMNNSSSLLLKIISDILDFSKIESE 576

FP236842_0324: domain 1 of 1, from 282 to 347: score 72.2, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l+ eq
FP236842_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDQEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
FP236842_0 318 ----------LKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

FP236842_1018: domain 1 of 1, from 249 to 317: score 69.3, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHE++TPL+++r +elL +++ ++l+++q
FP236842_1 249 QRHEFLRHISHEFKTPLASLREGTELLADQVA------GPLTADQ-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++++++++++l+rLi++lLd+ r a
FP236842_1 288 ----------REVVSILDDSSRHLQRLIEQLLDYNRKLAD 317

FP236842_0105: domain 1 of 1, from 238 to 300: score 67.6, E = 7.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ l+++ + ++
FP236842_0 238 AQQRLLSDISHELRTPLTRLQLATALMRR---------RHGEGKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+ +indlL lsr ++
FP236842_0 274 -------------LERIETEAQRLDGMINDLLVLSRTQHK 300

FP236842_0030: domain 1 of 1, from 129 to 186: score 60.3, E = 8.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
FP236842_0 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
FP236842_0 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

FP236842_1141: domain 1 of 1, from 230 to 293: score 58.3, E = 3.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+l ++sHELR PL+ +++++ l++ t+ s
FP236842_1 230 AREELLHDVSHELRSPLARLQLATGLARQ---------TPGSV---- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i++ea+rl+++i +lL+lsr e++
FP236842_1 264 ----------SASLDRIDEEARRLDKMIGELLTLSRTEHQ 293

FP236842_1373: domain 1 of 1, from 239 to 303: score 56.1, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+ +rg +e++++++ el+++
FP236842_1 239 MRRAFMADISHELRTPLAIMRGELEAIQDGV-------RELTPQS-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++d+ +ls ++g
FP236842_1 277 -------------IISLQGEVATLTKLVDDVHQLSLSDEG 303

FP236842_3427: domain 1 of 1, from 233 to 293: score 55.1, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e ++
FP236842_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMAE---------QD------- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
FP236842_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

FP236842_3568: domain 1 of 1, from 661 to 728: score 52.9, E = 1.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l++lsH+LRTPLt++ g ae+L +l + +++
FP236842_3 661 LRNALLSALSHDLRTPLTVLFGQAEILTLDL-------ASENSPY-- 698

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ rL+n+lLd++r+++g
FP236842_3 699 ----------AAQASAMREQTLNTIRLVNNLLDMARLQSG 728

FP236842_1740: domain 1 of 1, from 211 to 271: score 47.5, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ + l++ +
FP236842_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSDN-----------LTDAE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + r++ +l++Li+dlL+++r++ +
FP236842_1 245 -------------LAALNRDIGQLESLIEDLLTFARLDRP 271


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 10 0|=
-13 71 2|*=====
-12 161 83|======*======
-11 345 432|=========================== *
-10 603 801|=============================================== *
-9 712 827|======================================================= *
-8 593 619|============================================== *
-7 433 390|=============================*====
-6 299 224|=================*=====
-5 184 123|=========*=====
-4 91 65|====*==
-3 56 34|==*==
-2 27 18|=*=
-1 28 9|*==
0 4 4|*
1 3 2|*
2 5 1|*
3 3 0|=
4 1 0|=
5 0 0|
6 1 0|=
> 7 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 277.5460
P(chi-square) = 0

Total sequences searched: 3702

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: