Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Haemophilus influenzae Rd KW20  

Data for L42023  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: L42023.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
L42023_1345 CDS_1475628-1474351 73.0 1e-20 1
L42023_1672 CDS_1781745-1780390 45.7 5.4e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
L42023_1345 1/1 194 260 .. 1 87 [] 73.0 1e-20
L42023_1672 1/1 234 300 .. 1 87 [] 45.7 5.4e-13

Alignments of top-scoring domains:
L42023_1345: domain 1 of 1, from 194 to 260: score 73.0, E = 1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl+n+ HELRTPLt+++gy+e+L ++ +++ q
L42023_134 194 SRQKFLSNINHELRTPLTVLQGYLEILADN--------NIQNPLQ-- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++++r+++L++++ l++ie+
L42023_134 231 ----------KKAIXAMQEQSQRMEHLLQQFNFLAKIETT 260

L42023_1672: domain 1 of 1, from 234 to 300: score 45.7, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+++ + + r
L42023_167 234 RERRFTSDAAHELRSPLAALRIQIEVAQL---------AGDDVALR- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + + ++r ++Li++lL+lsr+++
L42023_167 271 ----------EQALLHLTQGIDRASQLIEQLLTLSRLDNL 300


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 6 0|=
-13 19 1|*===
-12 79 39|======*=======
-11 194 202|=================================*
-10 322 375|====================================================== *
-9 314 388|===================================================== *
-8 281 290|=============================================== *
-7 196 183|==============================*==
-6 137 105|=================*=====
-5 60 57|=========*
-4 45 30|====*===
-3 23 16|==*=
-2 13 8|=*=
-1 10 4|*=
0 3 2|*
1 2 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 85.2315
P(chi-square) = 4.699e-14

Total sequences searched: 1709

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: