Genome Atlas - 3.0 (beta)

	Crenarchaeota	Euryarchaeota	Nanoarchaeota
	Other Archaea

Classification of phyla is from NCBI page

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82 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	% Global Direct Repeats	% Global Inverted Repeats	% Local Direct Repeats	% Local Inverted Repeats	% Local Mirror Repeats	% Local Everted Repeats	% Simple Repeats

1	uncultured methanogenic archaeon RC-I	AEE	19641	1	3,179,916	45.4	6.10	4.20	6.90	3.20	3.20	2.20	0.50
2	Thermosphaera aggregans DSM 11486	ACTD	36571	1	1,316,595	53.3	0.20	0.20	4.00	2.20	2.30	1.60	0.00
3	Thermoproteus neutrophilus V24Sta	ACTT	15645	1	1,769,823	40.1	1.40	1.00	8.40	3.90	5.00	3.10	0.60
4	Thermoplasma volcanium GSS1	AETT	206	1	1,584,804	60.1	2.10	1.50	4.10	3.20	3.60	2.50	0.20
5	Thermoplasma acidophilum DSM 1728	AETT	110	1	1,564,906	54.0	0.60	0.50	3.80	2.40	2.30	1.70	0.30
6	Thermofilum pendens Hrk 5	ACTT	16331	2	1,813,393	42.3	2.46	2.36	6.48	3.04	4.01	2.39	0.51
7	Thermococcus sibiricus MM 739	AETT	34531	1	1,845,800	59.8	0.90	0.60	5.10	2.70	4.00	2.40	0.40
8	Thermococcus onnurineus NA1	AETT	20773	1	1,847,607	48.7	0.80	0.70	4.70	2.20	2.90	2.10	0.40
9	Thermococcus kodakarensis KOD1	AETT	13213	1	2,088,737	48.0	1.40	2.10	4.90	2.40	2.90	2.10	0.40
10	Thermococcus gammatolerans EJ3	AETT	33671	1	2,045,438	46.4	1.00	0.90	5.40	2.50	2.90	2.20	0.00
11	Sulfolobus solfataricus P2	ACTS	108	1	2,992,245	64.2	14.10	14.30	7.00	4.20	5.70	3.60	0.40
12	Sulfolobus solfataricus 98/2		30989	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
13	Sulfolobus islandicus Y.N.15.51	ACTS	18651	2	2,854,410	64.7	9.76	9.56	7.13	4.20	5.72	3.70	0.00
14	Sulfolobus islandicus Y.G.57.14	ACTS	19487	1	2,702,058	64.6	8.20	8.10	6.90	4.00	5.70	3.70	0.00
15	Sulfolobus islandicus M.16.4	ACTS	18807	1	2,586,647	65.0	2.90	2.40	6.90	4.20	5.70	3.70	0.50
16	Sulfolobus islandicus M.16.27	ACTS	18873	1	2,692,402	65.0	4.90	4.70	7.10	4.30	5.70	3.80	0.50
17	Sulfolobus islandicus M.14.25	ACTS	18871	1	2,608,832	64.9	4.20	4.00	7.00	4.20	5.60	3.70	0.50
18	Sulfolobus islandicus L.S.2.15	ACTS	18987	1	2,736,272	64.9	5.60	5.50	7.00	4.10	5.60	3.60	0.40
19	Sulfolobus islandicus L.D.8.5	ACTS	18803	2	2,748,647	64.7	6.48	5.85	6.92	4.01	5.61	3.49	0.40
20	Sulfolobus acidocaldarius DSM 639	ACTS	13935	1	2,225,959	63.3	0.60	0.90	5.80	3.40	4.80	3.10	0.30
21	Staphylothermus marinus F1	ACTD	17449	1	1,570,485	64.3	1.20	1.00	7.70	4.20	5.40	3.10	0.60
22	Staphylothermus hellenicus DSM 12710	ACTD	33683	1	1,580,347	63.2	1.10	0.90	7.10	3.80	5.10	2.80	0.50
23	Pyrococcus horikoshii OT3	AETT	207	1	1,738,505	58.1	0.50	0.80	5.20	2.50	4.10	2.20	0.40
24	Pyrococcus furiosus DSM 3638	AETT	287	1	1,908,256	59.2	2.30	1.80	5.60	2.70	4.10	2.30	0.40
25	Pyrococcus abyssi GE5	AETT	179	2	1,768,562	55.3	0.70	0.50	4.70	2.20	3.40	1.90	0.40
26	Pyrobaculum islandicum DSM 4184	ACTT	16743	1	1,826,402	50.4	5.10	5.20	5.20	2.70	3.50	2.00	0.40
27	Pyrobaculum calidifontis JCM 11548	ACTT	18111	1	2,009,313	42.8	1.40	1.40	6.60	2.80	3.60	1.90	0.60
28	Pyrobaculum arsenaticum DSM 13514	ACTT	15582	1	2,121,076	44.9	1.30	1.30	5.40	2.70	3.30	2.00	0.40
29	Pyrobaculum aerophilum str. IM2	ACTT	172	1	2,222,430	48.6	3.20	3.20	4.60	2.50	2.90	1.80	0.30
30	Picrophilus torridus DSM 9790	AETT	10641	1	1,545,895	64.0	0.50	0.50	9.90	6.50	6.60	4.70	0.60
31	Nitrosopumilus maritimus SCM1	ACTM	19265	1	1,645,259	65.8	3.00	0.60	10.10	5.30	5.90	3.40	0.60
32	Natronomonas pharaonis DSM 2160	AEHH	15742	3	2,749,696	36.9	2.03	1.83	10.18	7.20	4.59	3.72	0.88
33	Natrialba magadii ATCC 43099	AEHH	30691	4	4,443,643	39.0	2.77	2.12	10.85	5.95	4.02	2.42	1.30
34	Nanoarchaeum equitans Kin4-M	ANN	9599	1	490,885	68.4	0.50	0.40	12.50	6.50	9.70	5.40	0.80
35	Methanothermobacter thermautotrophicus str. Delta H	AEMMb	289	1	1,751,377	50.5	2.80	0.80	6.20	2.80	2.90	1.90	0.50
36	Methanospirillum hungatei JF-1	AEMM	13015	1	3,544,738	54.9	6.40	4.60	4.50	2.90	2.10	1.80	0.30
37	Methanosphaerula palustris E1-9c	AEC	29381	1	2,922,917	44.7	7.80	4.60	5.60	3.50	2.30	2.00	0.40
38	Methanosphaera stadtmanae DSM 3091	AEMMb	15579	1	1,767,403	72.4	5.60	4.20	20.80	12.10	16.60	10.00	1.30
39	Methanosarcina mazei Go1	AEMM	300	1	4,096,345	58.5	7.80	5.20	8.90	4.00	5.10	2.80	0.80
40	Methanosarcina barkeri str. Fusaro	AEMM	103	2	4,873,766	60.8	14.02	8.41	9.85	4.70	5.51	3.40	0.89
41	Methanosarcina acetivorans C2A	AEMM	290	1	5,751,492	57.3	14.70	10.10	8.10	3.70	4.40	2.60	0.70
42	Methanosaeta thermophila PT	AEMM	15765	1	1,879,471	46.5	4.90	3.70	4.80	2.90	2.20	1.50	0.30
43	Methanopyrus kandleri AV19	AEMM	294	1	1,694,969	38.8	1.50	1.40	6.60	3.80	4.00	2.50	0.70
44	Methanohalophilus mahii DSM 5219	AEMM	30711	1	2,012,424	57.4	N/A	N/A	4.40	3.00	2.70	2.00	0.30
45	Methanohalobium evestigatum Z-7303	AEMM	37945	2	2,406,232	63.6	8.48	6.18	6.82	4.98	5.08	3.62	0.37
46	Methanoculleus marisnigri JR1	AEMM	16330	1	2,478,101	37.9	5.10	2.10	8.40	5.50	3.90	3.30	0.60
47	Methanocorpusculum labreanum Z	AEMM	18109	1	1,804,962	50.0	4.10	3.30	4.50	2.90	2.10	1.60	0.40
48	Methanococcus voltae A3	AEMMc	20131	1	1,936,387	71.4	9.40	1.90	21.40	13.40	18.80	12.10	2.70
49	Methanococcus vannielii SB	AEMMc	17889	1	1,720,048	68.7	3.60	2.20	14.10	9.10	11.00	7.70	1.10
50	Methanococcus maripaludis S2	AEMMc	10632	1	1,661,137	66.9	2.40	0.60	11.80	7.40	9.00	5.90	0.80
51	Methanococcus maripaludis C7	AEMMc	18819	1	1,772,694	66.7	3.20	2.60	11.70	7.10	8.70	5.90	0.80
52	Methanococcus maripaludis C6	AEMMc	19639	1	1,744,193	66.6	2.90	1.60	11.50	6.90	8.60	5.80	0.80
53	Methanococcus maripaludis C5	AEMMc	17641	2	1,789,046	67.0	3.39	1.59	12.07	7.43	8.84	6.02	0.81
54	Methanococcus aeolicus Nankai-3	AEMMc	18641	1	1,569,500	70.0	3.00	2.40	18.00	10.50	15.10	8.60	1.50
55	Methanococcoides burtonii DSM 6242	AEMM	9634	1	2,575,032	59.2	7.80	7.50	5.00	3.40	3.20	2.30	0.30
56	Methanocella paludicola SANAE	AEMM	20361	1	2,957,635	45.1	5.40	4.50	6.90	3.20	3.60	2.60	0.00
57	Methanocaldococcus vulcanius M7	AEMMc	33047	3	1,761,737	68.4	2.18	2.08	15.25	6.69	12.64	6.08	1.19
58	Methanocaldococcus sp. FS406-22	AEMMc	37943	2	1,773,136	68.0	3.68	2.98	12.92	6.42	9.98	5.40	0.79
59	Methanocaldococcus jannaschii DSM 2661	AEMMc	102	3	1,739,927	68.7	2.65	2.49	13.73	6.90	11.13	5.87	0.80
60	Methanocaldococcus infernus ME	AEMMc	32611	1	1,328,194	66.4	2.50	3.60	13.00	6.10	9.20	4.70	0.80
61	Methanocaldococcus fervens AG86	AEMMc	32615	2	1,507,251	67.8	1.08	2.36	12.90	6.27	10.58	5.47	0.01
62	Methanobrevibacter smithii ATCC 35061	AEMMb	18653	1	1,853,160	69.0	4.90	2.50	14.10	8.30	9.80	6.80	0.90
63	Methanobrevibacter ruminantium M1	AEMMb	34681	1	2,937,203	67.4	5.80	1.90	20.70	10.90	14.50	8.40	0.00
64	Metallosphaera sedula DSM 5348	ACTS	17447	1	2,191,517	53.8	0.80	0.40	4.40	2.30	2.90	2.00	0.30
65	Ignicoccus hospitalis KIN4/I	ACTD	13914	1	1,297,538	43.5	0.80	0.80	6.70	2.90	3.70	2.30	0.50
66	Hyperthermus butylicus DSM 5456	ACTD	208	1	1,667,163	46.3	0.30	0.20	4.60	2.40	2.40	1.60	0.40
67	Haloterrigena turkmenica DSM 5511	AEHH	30411	7	5,440,782	35.7	3.67	2.50	14.04	9.77	4.48	3.59	1.04
68	Halorubrum lacusprofundi ATCC 49239	AEHH	18455	3	3,692,576	36.0	5.68	4.56	13.70	9.55	4.86	3.92	1.14
69	Halorhabdus utahensis DSM 12940	AEHH	29305	1	3,116,795	37.1	2.90	0.80	10.00	6.70	3.40	2.60	0.00
70	Halomicrobium mukohataei DSM 12286	AEHH	27945	2	3,332,349	34.5	3.45	2.71	13.86	9.93	5.15	4.08	1.03
71	Haloferax volcanii DS2	AEHH	12524	5	4,012,900	34.5	4.11	3.81	16.38	11.01	5.22	4.05	0.25
72	Halobacterium salinarum R1	AEHH	106	5	2,668,776	34.3	3.59	2.62	14.14	9.87	6.24	5.10	1.10
73	Halalkalicoccus jeotgali B3	AEHH	49517	7	3,698,650	37.5	2.55	1.18	10.29	6.73	3.78	3.00	0.85
74	Ferroglobus placidus DSM 10642	AEAA	33635	1	2,196,266	55.9	2.00	1.40	5.70	2.60	4.20	2.30	0.00
75	Desulfurococcus kamchatkensis 1221n	ACTD	28141	1	1,365,223	54.7	2.30	2.30	4.20	2.40	2.60	1.50	0.30
76	Candidatus Methanoregula boonei 6A8	AEMM	18505	1	2,542,943	45.5	2.80	1.90	4.60	3.10	2.20	1.90	0.30
77	Candidatus Korarchaeum cryptofilum OPF8	AKC	16525	1	1,590,757	51.0	0.90	0.90	5.30	2.40	3.50	2.10	0.40
78	Caldivirga maquilingensis IC-167	ACTT	17421	1	2,077,567	56.9	1.50	1.50	7.10	3.60	3.50	2.10	0.50
79	Archaeoglobus profundus DSM 5631	AEAA	32583	2	1,563,423	58.0	1.00	1.10	5.10	2.31	3.90	1.90	0.00
80	Archaeoglobus fulgidus DSM 4304	AEAA	104	1	2,178,400	51.4	2.10	1.90	5.10	2.20	3.20	1.80	0.50
81	Aeropyrum pernix K1	ACTD	211	1	1,669,696	43.7	0.80	0.70	5.90	3.20	3.30	2.00	0.50
82	Aciduliprofundum boonei T469	AEA	38403	1	1,486,778	60.8	1.50	1.30	6.40	2.80	4.40	2.40	0.40

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini