Genome Atlas - 3.0 (beta)

	Crenarchaeota	Euryarchaeota	Nanoarchaeota
	Other Archaea

Classification of phyla is from NCBI page

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54 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	% Global Direct Repeats	% Global Inverted Repeats	% Local Direct Repeats	% Local Inverted Repeats	% Local Mirror Repeats	% Local Everted Repeats	% Simple Repeats

1	Archaeoglobus fulgidus DSM 4304	AEAA	104	1	2,178,400	51.4	2.10	1.90	5.10	2.20	3.20	1.80	0.50
2	Thermococcus onnurineus NA1	AETT	20773	1	1,847,607	48.7	0.80	0.70	4.70	2.20	2.90	2.10	0.40
3	Pyrococcus abyssi GE5	AETT	179	2	1,768,562	55.3	0.70	0.50	4.70	2.20	3.40	1.90	0.40
4	Archaeoglobus profundus DSM 5631	AEAA	32583	2	1,563,423	58.0	1.00	1.10	5.10	2.31	3.90	1.90	0.00
5	Thermoplasma acidophilum DSM 1728	AETT	110	1	1,564,906	54.0	0.60	0.50	3.80	2.40	2.30	1.70	0.30
6	Thermococcus kodakarensis KOD1	AETT	13213	1	2,088,737	48.0	1.40	2.10	4.90	2.40	2.90	2.10	0.40
7	Pyrococcus horikoshii OT3	AETT	207	1	1,738,505	58.1	0.50	0.80	5.20	2.50	4.10	2.20	0.40
8	Thermococcus gammatolerans EJ3	AETT	33671	1	2,045,438	46.4	1.00	0.90	5.40	2.50	2.90	2.20	0.00
9	Ferroglobus placidus DSM 10642	AEAA	33635	1	2,196,266	55.9	2.00	1.40	5.70	2.60	4.20	2.30	0.00
10	Pyrococcus furiosus DSM 3638	AETT	287	1	1,908,256	59.2	2.30	1.80	5.60	2.70	4.10	2.30	0.40
11	Thermococcus sibiricus MM 739	AETT	34531	1	1,845,800	59.8	0.90	0.60	5.10	2.70	4.00	2.40	0.40
12	Methanothermobacter thermautotrophicus str. Delta H	AEMMb	289	1	1,751,377	50.5	2.80	0.80	6.20	2.80	2.90	1.90	0.50
13	Aciduliprofundum boonei T469	AEA	38403	1	1,486,778	60.8	1.50	1.30	6.40	2.80	4.40	2.40	0.40
14	Methanospirillum hungatei JF-1	AEMM	13015	1	3,544,738	54.9	6.40	4.60	4.50	2.90	2.10	1.80	0.30
15	Methanosaeta thermophila PT	AEMM	15765	1	1,879,471	46.5	4.90	3.70	4.80	2.90	2.20	1.50	0.30
16	Methanocorpusculum labreanum Z	AEMM	18109	1	1,804,962	50.0	4.10	3.30	4.50	2.90	2.10	1.60	0.40
17	Methanohalophilus mahii DSM 5219	AEMM	30711	1	2,012,424	57.4	N/A	N/A	4.40	3.00	2.70	2.00	0.30
18	Candidatus Methanoregula boonei 6A8	AEMM	18505	1	2,542,943	45.5	2.80	1.90	4.60	3.10	2.20	1.90	0.30
19	Thermoplasma volcanium GSS1	AETT	206	1	1,584,804	60.1	2.10	1.50	4.10	3.20	3.60	2.50	0.20
20	uncultured methanogenic archaeon RC-I	AEE	19641	1	3,179,916	45.4	6.10	4.20	6.90	3.20	3.20	2.20	0.50
21	Methanocella paludicola SANAE	AEMM	20361	1	2,957,635	45.1	5.40	4.50	6.90	3.20	3.60	2.60	0.00
22	Methanococcoides burtonii DSM 6242	AEMM	9634	1	2,575,032	59.2	7.80	7.50	5.00	3.40	3.20	2.30	0.30
23	Methanosphaerula palustris E1-9c	AEC	29381	1	2,922,917	44.7	7.80	4.60	5.60	3.50	2.30	2.00	0.40
24	Methanosarcina acetivorans C2A	AEMM	290	1	5,751,492	57.3	14.70	10.10	8.10	3.70	4.40	2.60	0.70
25	Methanopyrus kandleri AV19	AEMM	294	1	1,694,969	38.8	1.50	1.40	6.60	3.80	4.00	2.50	0.70
26	Methanosarcina mazei Go1	AEMM	300	1	4,096,345	58.5	7.80	5.20	8.90	4.00	5.10	2.80	0.80
27	Methanosarcina barkeri str. Fusaro	AEMM	103	2	4,873,766	60.8	14.02	8.41	9.85	4.70	5.51	3.40	0.89
28	Methanohalobium evestigatum Z-7303	AEMM	37945	2	2,406,232	63.6	8.48	6.18	6.82	4.98	5.08	3.62	0.37
29	Methanoculleus marisnigri JR1	AEMM	16330	1	2,478,101	37.9	5.10	2.10	8.40	5.50	3.90	3.30	0.60
30	Natrialba magadii ATCC 43099	AEHH	30691	4	4,443,643	39.0	2.77	2.12	10.85	5.95	4.02	2.42	1.30
31	Methanocaldococcus infernus ME	AEMMc	32611	1	1,328,194	66.4	2.50	3.60	13.00	6.10	9.20	4.70	0.80
32	Methanocaldococcus fervens AG86	AEMMc	32615	2	1,507,251	67.8	1.08	2.36	12.90	6.27	10.58	5.47	0.01
33	Methanocaldococcus sp. FS406-22	AEMMc	37943	2	1,773,136	68.0	3.68	2.98	12.92	6.42	9.98	5.40	0.79
34	Picrophilus torridus DSM 9790	AETT	10641	1	1,545,895	64.0	0.50	0.50	9.90	6.50	6.60	4.70	0.60
35	Methanocaldococcus vulcanius M7	AEMMc	33047	3	1,761,737	68.4	2.18	2.08	15.25	6.69	12.64	6.08	1.19
36	Halorhabdus utahensis DSM 12940	AEHH	29305	1	3,116,795	37.1	2.90	0.80	10.00	6.70	3.40	2.60	0.00
37	Halalkalicoccus jeotgali B3	AEHH	49517	7	3,698,650	37.5	2.55	1.18	10.29	6.73	3.78	3.00	0.85
38	Methanococcus maripaludis C6	AEMMc	19639	1	1,744,193	66.6	2.90	1.60	11.50	6.90	8.60	5.80	0.80
39	Methanocaldococcus jannaschii DSM 2661	AEMMc	102	3	1,739,927	68.7	2.65	2.49	13.73	6.90	11.13	5.87	0.80
40	Methanococcus maripaludis C7	AEMMc	18819	1	1,772,694	66.7	3.20	2.60	11.70	7.10	8.70	5.90	0.80
41	Natronomonas pharaonis DSM 2160	AEHH	15742	3	2,749,696	36.9	2.03	1.83	10.18	7.20	4.59	3.72	0.88
42	Methanococcus maripaludis S2	AEMMc	10632	1	1,661,137	66.9	2.40	0.60	11.80	7.40	9.00	5.90	0.80
43	Methanococcus maripaludis C5	AEMMc	17641	2	1,789,046	67.0	3.39	1.59	12.07	7.43	8.84	6.02	0.81
44	Methanobrevibacter smithii ATCC 35061	AEMMb	18653	1	1,853,160	69.0	4.90	2.50	14.10	8.30	9.80	6.80	0.90
45	Methanococcus vannielii SB	AEMMc	17889	1	1,720,048	68.7	3.60	2.20	14.10	9.10	11.00	7.70	1.10
46	Halorubrum lacusprofundi ATCC 49239	AEHH	18455	3	3,692,576	36.0	5.68	4.56	13.70	9.55	4.86	3.92	1.14
47	Haloterrigena turkmenica DSM 5511	AEHH	30411	7	5,440,782	35.7	3.67	2.50	14.04	9.77	4.48	3.59	1.04
48	Halobacterium salinarum R1	AEHH	106	5	2,668,776	34.3	3.59	2.62	14.14	9.87	6.24	5.10	1.10
49	Halomicrobium mukohataei DSM 12286	AEHH	27945	2	3,332,349	34.5	3.45	2.71	13.86	9.93	5.15	4.08	1.03
50	Methanococcus aeolicus Nankai-3	AEMMc	18641	1	1,569,500	70.0	3.00	2.40	18.00	10.50	15.10	8.60	1.50
51	Methanobrevibacter ruminantium M1	AEMMb	34681	1	2,937,203	67.4	5.80	1.90	20.70	10.90	14.50	8.40	0.00
52	Haloferax volcanii DS2	AEHH	12524	5	4,012,900	34.5	4.11	3.81	16.38	11.01	5.22	4.05	0.25
53	Methanosphaera stadtmanae DSM 3091	AEMMb	15579	1	1,767,403	72.4	5.60	4.20	20.80	12.10	16.60	10.00	1.30
54	Methanococcus voltae A3	AEMMc	20131	1	1,936,387	71.4	9.40	1.90	21.40	13.40	18.80	12.10	2.70

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini