| 1 | Waddlia chondrophila WSU 86-1044 | BChlam CW | 43761 | 2 | 2,131,905 | 56.3 | 1,956 | 0.9 | 1,091 | N/A | N/A |
| 2 | Chlamydia trachomatis 434/Bu | BChlam CC | 28583 | 1 | 1,038,842 | 58.7 | 889 | 0.9 | 1,169 | N/A | N/A |
| 3 | Chlamydia trachomatis L2b/UCH-1/proctitis | BChlam CC | 28585 | 1 | 1,038,869 | 58.7 | 889 | 0.9 | 1,169 | N/A | N/A |
| 4 | Chlamydia trachomatis D/UW-3/CX | BChlam CC | 45 | 1 | 1,042,519 | 58.7 | 894 | 0.9 | 1,166 | 809 | N/A |
| 5 | Chlamydia trachomatis E/11023 | BChlam CC | 43141 | 1 | 1,043,025 | 58.7 | 926 | 0.9 | 1,126 | N/A | N/A |
| 6 | Chlamydia trachomatis E/150 | BChlam CC | 43143 | 1 | 1,042,996 | 58.7 | 927 | 0.9 | 1,125 | N/A | N/A |
| 7 | Chlamydia trachomatis G/9768 | BChlam CC | 43145 | 1 | 1,042,810 | 58.7 | 920 | 0.9 | 1,134 | N/A | N/A |
| 8 | Chlamydia trachomatis G/11222 | BChlam CC | 43147 | 1 | 1,042,354 | 58.7 | 927 | 0.9 | 1,124 | N/A | N/A |
| 9 | Chlamydia trachomatis G/11074 | BChlam CC | 43149 | 1 | 1,042,875 | 58.7 | 919 | 0.9 | 1,135 | N/A | N/A |
| 10 | Chlamydia trachomatis G/9301 | BChlam CC | 45851 | 1 | 1,042,811 | 58.7 | 921 | 0.9 | 1,132 | N/A | N/A |
| 11 | Chlamydia trachomatis B/TZ1A828/OT | BChlam CC | 32653 | 1 | 1,044,282 | 58.7 | 894 | 0.9 | 1,168 | N/A | N/A |
| 12 | Chlamydia trachomatis B/Jali20/OT | BChlam CC | 32655 | 1 | 1,044,352 | 58.7 | 893 | 0.9 | 1,170 | N/A | N/A |
| 13 | Chlamydia trachomatis D-EC | BChlam CC | 48087 | 2 | 1,050,015 | 58.7 | 878 | 0.9 | 1,196 | N/A | N/A |
| 14 | Chlamydia trachomatis D-LC | BChlam CC | 48089 | 2 | 1,050,013 | 58.7 | 878 | 0.9 | 1,196 | N/A | N/A |
| 15 | Chlamydia trachomatis A/HAR-13 | BChlam CC | 13885 | 2 | 1,051,969 | 58.7 | 919 | 0.9 | 1,145 | 825 | N/A |
| 16 | Chlamydophila pneumoniae AR39 | BChlam CC | 247 | 2 | 1,234,385 | 59.4 | 1,116 | 0.9 | 1,107 | 924 | N/A |
| 17 | Chlamydophila pneumoniae CWL029 | BChlam CC | 248 | 1 | 1,230,230 | 59.4 | 1,052 | 0.9 | 1,169 | 932 | N/A |
| 18 | Chlamydophila pneumoniae J138 | BChlam CC | 257 | 1 | 1,226,565 | 59.4 | 1,069 | 0.9 | 1,147 | 941 | N/A |
| 19 | Chlamydophila pneumoniae TW-183 | BChlam CC | 420 | 1 | 1,225,935 | 59.4 | 1,113 | 0.9 | 1,102 | 939 | N/A |
| 20 | Chlamydophila pneumoniae LPCoLN | BChlam CC | 17947 | 2 | 1,248,550 | 59.5 | 1,105 | 0.9 | 1,130 | N/A | N/A |
| 21 | Chlamydia muridarum Nigg | BChlam CC | 229 | 2 | 1,080,451 | 59.7 | 911 | 0.9 | 1,186 | 817 | N/A |
| 22 | Chlamydophila abortus S26/3 | BChlam CC | 355 | 1 | 1,144,377 | 60.1 | 961 | 0.9 | 1,191 | 867 | N/A |
| 23 | Chlamydophila felis Fe/C-56 | BChlam CC | 370 | 2 | 1,173,791 | 60.7 | 1,013 | 0.9 | 1,159 | 905 | N/A |
| 24 | Chlamydophila caviae GPIC | BChlam CC | 228 | 2 | 1,181,356 | 60.8 | 1,005 | 0.9 | 1,175 | 894 | N/A |
| 25 | Candidatus Protochlamydia amoebophila UWE25 | BChlam CP | 10700 | 1 | 2,414,465 | 65.3 | 2,031 | 0.8 | 1,189 | 1,601 | N/A |