Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATHisKA
Count
HisKA 1
Count
HisKA 2
Count
HisKA 3
Count
HWE HK
Count
RRReceiver
Count
1Acholeplasma laidlawii PG-8ABFirm MA1925911,496,99268.1220002
2Acidaminococcus fermentans DSM 20731BFirm CC3368512,329,76944.2770009
3Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446BFirm BA2940543,205,68638.1201703018
4Alkaliphilus metalliredigens QYMFBFirm CC1300614,929,56663.2423615064
5Alkaliphilus oremlandii OhILAsBFirm CC1608313,123,55863.7232201037
6Ammonifex degensii KC4BFirm CT1239022,157,06740.58701014
7Anaerocellum thermophilum DSM 6725BFirm CC2940732,931,66264.86600025
8Anaerococcus prevotii DSM 20548BFirm CC2953321,998,63364.46600011
9Anoxybacillus flavithermus WK1BFirm BB2824512,846,74658.2181404023
10Bacillus amyloliquefaciens FZB42BFirm BB1340313,918,58953.5281909036
11Bacillus anthracis CI363094290,59567.0000000
12Bacillus anthracis str. 'Ames Ancestor'BFirm BB1078435,503,92664.8393504046
13Bacillus anthracis str. A0248BFirm BB3354335,503,92664.8383404046
14Bacillus anthracis str. AmesBFirm BB30915,227,29364.6393504046
15Bacillus anthracis str. CDC 684BFirm BB3132935,506,76364.8423705049
16Bacillus anthracis str. SterneBFirm BB1087815,228,66364.6423705049
17Bacillus cereus 03BB102BFirm BB3130725,449,30864.7453807050
18Bacillus cereus AH187BFirm BB1771555,599,85764.5393405045
19Bacillus cereus AH820BFirm BB1771145,588,83464.7443905050
20Bacillus cereus ATCC 10987BFirm BB7425,432,65264.5423507048
21Bacillus cereus ATCC 14579BFirm BB38425,427,08364.7413506047
22Bacillus cereus B4264BFirm BB1773115,419,03664.7474106051
23Bacillus cereus E33LBFirm BB1246865,843,23564.9433706050
24Bacillus cereus G9842BFirm BB1773335,736,82365.0464006050
25Bacillus cereus Q1BFirm BB1622035,506,20764.5373205048
26Bacillus clausii KSM-K16BFirm BB1329114,303,87155.3302109041
27Bacillus cytotoxicus NVH 391-98BFirm BB1362424,094,15964.1242103027
28Bacillus halodurans C-125BFirm BB23514,202,35256.3261907049
29Bacillus licheniformis ATCC 14580BFirm BB1308214,222,64553.8261709038
30Bacillus megaterium DSM319BFirm BB4242515,097,44761.9463916052
31Bacillus megaterium QM B1551BFirm BB3016585,523,19262.1413416048
32Bacillus pumilus SAFR-032BFirm BB2039113,704,46558.7211605029
33Bacillus selenitireducens MLS10BFirm BB1337613,592,48751.3251906040
34Bacillus subtilis subsp. subtilis str. 168BFirm BB7614,214,63056.5231409035
35Bacillus thuringiensis BMB171BFirm BB4363125,643,05164.8423606049
36Bacillus thuringiensis str. Al HakamBFirm BB1825525,313,03064.6473908052
37Bacillus tusciae DSM 2912BFirm BA3134513,384,76640.913904016
38Brevibacillus brevis NBRC 100599BFirm BP2914716,296,43652.77157113088
39Candidatus Desulforudis audaxviator MP104CBFirm CC2104712,349,47639.17700016
40Candidatus Phytoplasma australienseBTMA294691879,95972.6000000
41Carboxydothermus hydrogenoformans Z-2901BFirm CC25312,401,52058.09900019
42Clostridiales genomosp. BVAB3 str. UPII9-5BFirm CC4255511,810,24855.8660009
43Clostridium acetobutylicum ATCC 824BFirm CC7724,132,88069.1292216041
44Clostridium beijerinckii NCIMB 8052BFirm CC1263716,000,63270.1646301088
45Clostridium botulinum A str. ATCC 19397BFirm CC1951713,863,45071.8272601042
46Clostridium botulinum A str. HallBFirm CC1952113,760,56071.8262501042
47Clostridium botulinum A2 str. KyotoBFirm CC2985914,155,27871.8323002046
48Clostridium botulinum A3 str. Loch MareeBFirm CC2850724,259,69171.9323002045
49Clostridium botulinum B str. Eklund 17BBFirm CC2885723,847,96972.5323200035
50Clostridium botulinum B1 str. OkraBFirm CC2850524,107,01371.8302901047
51Clostridium botulinum Ba4 str. 657BFirm CC2907734,257,76972.0282701043
52Clostridium botulinum E3 str. Alaska E43BFirm CC2885513,659,64472.6272700029
53Clostridium botulinum F str. 230613BFirm CC4757524,010,61471.7272601045
54Clostridium botulinum F str. LangelandBFirm CC1951924,012,91871.7302901047
55Clostridium cellulolyticum H10BFirm CC1741914,068,72462.6161501038
56Clostridium difficile 630BFirm CC7824,298,13370.9383611053
57Clostridium difficile R20291380391N/AN/AN/AN/AN/AN/AN/AN/A
58Clostridium kluyveri DSM 555BFirm CC1906524,023,80068.0333300040
59Clostridium kluyveri NBRC 12016BFirm CC3327123,955,30368.0323200040
60Clostridium ljungdahlii ATCC 49587134921N/AN/AN/AN/AN/AN/AN/AN/A
61Clostridium novyi NTBFirm CC1682012,547,72071.1161501020
62Clostridium perfringens ATCC 13124BFirm CC30413,256,68371.6201910024
63Clostridium perfringens SM101BFirm CC1252142,960,08871.8151500019
64Clostridium perfringens str. 13BFirm CC7923,085,74071.5181710021
65Clostridium phytofermentans ISDgBFirm CC1618414,847,59464.6312704060
66Clostridium tetani E88BFirm CC8122,873,33371.4212010030
67Clostridium thermocellum ATCC 27405BFirm CC31413,843,30161.0212001037
68Coprothermobacter proteolyticus DSM 5265BFirm CT3072911,424,91255.2330006
69Desulfitobacterium hafniense DCB-2BFirm CC20515,279,13452.5444004065
70Desulfitobacterium hafniense Y51BFirm CC1663915,727,53452.6484305071
71Desulfotomaculum acetoxidans DSM 771BFirm CC2794714,545,62458.5323200052
72Desulfotomaculum reducens MI-1BFirm CC1342413,608,10457.7242211033
73Enterococcus faecalis V583BFirm LE7043,359,97462.610811017
74Eubacterium eligens ATCC 27750BFirm CC2907332,831,38962.4171601030
75Eubacterium rectale ATCC 33656BFirm CC2907113,449,68558.5232201040
76Exiguobacterium sibiricum 255-15BFirm BB1064933,040,78652.3252302024
77Exiguobacterium sp. AT1bBFirm BB2775912,999,89551.5211902023
78Finegoldia magna ATCC 29328BFirm CC1898121,986,74067.98800013
79Geobacillus kaustophilus HTA426BFirm BB1323323,592,66648.0211704028
80Geobacillus sp. C56-T3BFirm BB4170113,650,81347.5231805032
81Geobacillus sp. WCH70BFirm BB2080533,508,80457.2121101019
82Geobacillus sp. Y412MC10BFirm BB2777717,121,66548.870520180132
83Geobacillus sp. Y412MC61BFirm BB3053723,667,90147.7201604029
84Geobacillus thermodenitrificans NG80-2BFirm BB1865523,608,01251.1211803027
85Halothermothrix orenii H 168BFirm CH1637712,578,14662.16402015
86Heliobacterium modesticaldum Ice1BFirm CC1342713,075,40743.0212001033
87Lactobacillus acidophilus NCFMBFirm LL8211,993,56165.3660006
88Lactobacillus brevis ATCC 367BFirm LL40432,340,22853.9770009
89Lactobacillus casei ATCC 334BFirm LL40222,924,32553.4131102016
90Lactobacillus casei BL23BFirm LL3035913,079,19653.7131102016
91Lactobacillus casei str. Zhang285371N/AN/AN/AN/AN/AN/AN/AN/A
92Lactobacillus crispatus ST1BFirm LL4681312,043,16163.1660006
93Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842BFirm LL1687111,864,99850.3660005
94Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365BFirm LL40311,856,95150.3660006
95Lactobacillus fermentum CECT 5716BFirm LL4353312,100,44948.4650101
96Lactobacillus fermentum IFO 3956BFirm LL1897912,098,68548.5540105
97Lactobacillus gasseri ATCC 33323BFirm LL8411,894,36064.7550005
98Lactobacillus helveticus DPC 4571BFirm LL1781112,080,93162.9440004
99Lactobacillus johnsonii FI9785BFirm LL3657531,785,11665.6660006
100Lactobacillus johnsonii NCC 533BFirm LL963811,992,67665.4760107
101Lactobacillus plantarum JDM1BFirm LL3296913,197,75955.3N/AN/AN/AN/AN/AN/A
102Lactobacillus plantarum WCFS1BFirm LL35643,348,62555.68602010
103Lactobacillus reuteri DSM 20016BFirm LL1576611,999,61861.1550009
104Lactobacillus reuteri JCM 1112BFirm LL1901112,039,41461.16501010
105Lactobacillus rhamnosus GGBFirm LL3219513,010,11153.3131102016
106Lactobacillus rhamnosus GGBFirm LL4063713,005,05153.3131102016
107Lactobacillus rhamnosus Lc 705BFirm LL3219723,033,10653.3131102016
108Lactobacillus sakei subsp. sakei 23KBFirm LL1343511,884,66158.7860209
109Lactobacillus salivarius CECT 5713435354N/AN/AN/AN/AN/AN/AN/AN/A
110Lactobacillus salivarius UCC118BFirm LL1328042,133,97767.0750207
111Lactococcus lactis subsp. cremoris MG1363BFirm LS1879712,529,47864.2650107
112Lactococcus lactis subsp. cremoris NZ9000466231N/AN/AN/AN/AN/AN/AN/AN/A
113Lactococcus lactis subsp. cremoris SK11BFirm LS40162,598,34864.2870109
114Lactococcus lactis subsp. lactis Il1403BFirm LS7212,365,58964.7650107
115Lactococcus lactis subsp. lactis KF147BFirm LS4111522,635,65465.18701010
116Leuconostoc citreum KM20BFirm LL1606251,896,61461.1550006
117Leuconostoc kimchii IMSNU 11154BFirm LL4083762,101,78762.1650109
118Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293BFirm LL31522,075,76362.3760108
119Listeria innocua Clip11262BFirm BL8623,093,11362.611911017
120Listeria monocytogenesBFirm BL3636123,109,34262.111911017
121Listeria monocytogenes 08-5923BFirm BL3636312,999,05462.011911017
122Listeria monocytogenes Clip80459BFirm BL3220712,912,69061.910811015
123Listeria monocytogenes EGD-eBFirm BL27612,944,52862.011911017
124Listeria monocytogenes HCC23BFirm BL2940912,976,21261.810811016
125Listeria monocytogenes str. 4b F2365BFirm BL8512,905,18762.010811016
126Listeria seeligeri serovar 1/2b str. SLCC3954BFirm BL4112312,797,63662.610811016
127Listeria welshimeri serovar 6b str. SLCC5334BFirm BL1344312,814,13063.711911018
128Lysinibacillus sphaericus C3-41BFirm BB1961924,817,46362.9342815057
129Macrococcus caseolyticus JCSC5402BFirm BM2020992,219,73763.411704014
130Mesoplasma florum L1BFirm ME106501793,22473.0000000
131Moorella thermoacetica ATCC 39073BFirm CT1064812,628,78444.27502018
132Mycoplasma agalactiae PG2BFirm MM160951877,43870.3000000
133Mycoplasma arthritidis 158L3-1BFirm MM14221820,45369.3000000
134Mycoplasma capricolum subsp. capricolum ATCC 27343BFirm MM1620811,010,02376.2000000
135Mycoplasma crocodyli MP145BTMM290211934,37973.0000000
136Mycoplasma genitalium G37BFirm MM971580,07668.3000000
137Mycoplasma hyopneumoniae 232BFirm MM131201892,75871.4000000
138Mycoplasma hyopneumoniae 7448BFirm MM106391920,07971.5000000
139Mycoplasma mobile 163KBFirm MM106971777,07975.1000000
140Mycoplasma mycoides subsp. capri str. GM12BTMM1924511,089,20276.1000000
141Mycoplasma mycoides subsp. mycoides SC str. PG1BFirm MM1061611,211,70376.0000000
142Mycoplasma penetrans HF-2BFirm MM17611,358,63374.3000000
143Mycoplasma pulmonis UAB CTIPBFirm MM1001963,87973.4000000
144Mycoplasma synoviae 53BFirm MM106761799,47671.5000000
145Natranaerobius thermophilus JW/NM-WN-LFBFirm CN2020733,191,45363.711605022
146Oceanobacillus iheyensis HTE831BFirm BB28413,630,52864.313805021
147Oenococcus oeni PSU-1BFirm LO31711,780,51762.1550006
148Onion yellows phytoplasma OY-MBFirm MA96151860,63172.3000000
149Paenibacillus sp. JDR-2BFirm BP2039917,184,93049.75748090142
150Pediococcus pentosaceus ATCC 25745BFirm LL39811,832,38762.6650108
151Pelotomaculum thermopropionicum SIBFirm CC1902313,025,37547.0171601029
152Staphylococcus aureus 04-02981BFirm BS3480912,821,45267.112804017
153Staphylococcus aureus ED98BFirm BS3954742,847,54267.211704016
154Staphylococcus aureus RF122BFirm BS6312,742,53167.210703014
155Staphylococcus aureus subsp. aureus COLBFirm BS23822,813,86267.211704016
156Staphylococcus aureus subsp. aureus ED133BFirm BS4127712,832,47867.111704016
157Staphylococcus aureus subsp. aureus JH1BFirm BS1575822,936,93667.112804017
158Staphylococcus aureus subsp. aureus JH9BFirm BS1575722,937,12967.112804017
159Staphylococcus aureus subsp. aureus MRSA252BFirm BS26512,902,61967.212804017
160Staphylococcus aureus subsp. aureus MSSA476BFirm BS26622,820,45467.211704016
161Staphylococcus aureus subsp. aureus Mu3BFirm BS1850912,880,16867.112804017
162Staphylococcus aureus subsp. aureus Mu50BFirm BS26322,903,63667.212804017
163Staphylococcus aureus subsp. aureus MW2BFirm BS30612,820,46267.211704016
164Staphylococcus aureus subsp. aureus N315BFirm BS26422,839,46967.212804017
165Staphylococcus aureus subsp. aureus NCTC 8325BFirm BS23712,821,36167.111704016
166Staphylococcus aureus subsp. aureus ST398BFirm BS2942742,885,36767.110703015
167Staphylococcus aureus subsp. aureus str. NewmanBFirm BS1880112,878,89767.111704016
168Staphylococcus aureus subsp. aureus TW2036647332,59667.5000000
169Staphylococcus aureus subsp. aureus USA300_FPR3757BFirm BS1631342,917,46967.311704016
170Staphylococcus aureus subsp. aureus USA300_TCH1516BFirm BS1948932,903,08167.311704016
171Staphylococcus carnosus subsp. carnosus TM300BFirm BS3481112,566,42465.411713013
172Staphylococcus epidermidis ATCC 12228BFirm BS27972,564,61567.910604016
173Staphylococcus epidermidis RP62ABFirm BS6422,643,84067.911704016
174Staphylococcus haemolyticus JCSC1435BFirm BS1250842,697,86167.211704015
175Staphylococcus lugdunensis HKU09-01BFirm BS4239512,658,36666.113904018
176Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305BFirm BS1559632,577,89966.88503011
177Streptococcus agalactiae 2603V/RBFirm LS33012,160,26764.3121002019
178Streptococcus agalactiae A909BFirm LS32612,127,83964.4131102021
179Streptococcus agalactiae NEM316BFirm LS33412,211,48564.4121002020
180Streptococcus dysgalactiae subsp. equisimilis GGS_124BFirm LS2784912,106,34060.49702015
181Streptococcus equi subsp. equi 4047BFirm LS3076512,253,79358.77601012
182Streptococcus equi subsp. zooepidemicusBFirm LS3076712,149,86858.59702014
183Streptococcus equi subsp. zooepidemicus MGCS10565BFirm LS3078112,024,17158.27502012
184Streptococcus gallolyticus UCN34BFirm LS3472912,350,91162.411704012
185Streptococcus gordonii str. Challis substr. CH1BFirm LS6612,196,66259.510703014
186Streptococcus mitis B6BFirm LS1630212,146,61160.08602012
187Streptococcus mutans NN2025289971N/AN/AN/AN/AN/AN/AN/AN/A
188Streptococcus mutans UA159BFirm LS33312,030,92163.29603013
189Streptococcus pneumoniae 70585BFirm LS2804312,184,68260.39702013
190Streptococcus pneumoniae ATCC 700669BFirm LS3123312,221,31560.58602011
191Streptococcus pneumoniae CGSP14BFirm LS2917912,209,19860.58602010
192Streptococcus pneumoniae D39BFirm LS1637412,046,11560.38602012
193Streptococcus pneumoniae G54BFirm LS2904712,078,95360.38602011
194Streptococcus pneumoniae Hungary19A-6BFirm LS2803512,245,61560.48602012
195Streptococcus pneumoniae JJABFirm LS2803912,120,23460.38602011
196Streptococcus pneumoniae P1031BFirm LS2804112,111,88260.38602012
197Streptococcus pneumoniae R6BFirm LS27812,038,61560.38602012
198Streptococcus pneumoniae Taiwan19F-14BFirm LS2803712,112,14860.28602012
199Streptococcus pneumoniae TCH8431/19ABFirm LS3465912,088,77260.28602012
200Streptococcus pneumoniae TIGR4BFirm LS27712,160,84260.38602012
201Streptococcus pyogenes M1 GASBFirm LS26911,852,44161.57601011
202Streptococcus pyogenes MGAS10270BFirm LS1636411,928,25261.67601012
203Streptococcus pyogenes MGAS10394BFirm LS1246911,899,87761.36501011
204Streptococcus pyogenes MGAS10750BFirm LS1636611,937,11161.77601012
205Streptococcus pyogenes MGAS2096BFirm LS1636511,860,35561.38701013
206Streptococcus pyogenes MGAS315BFirm LS31111,900,52161.46501011
207Streptococcus pyogenes MGAS5005BFirm LS1388811,838,55461.57601012
208Streptococcus pyogenes MGAS6180BFirm LS1388711,897,57361.77601012
209Streptococcus pyogenes MGAS8232BFirm LS28611,895,01761.46501011
210Streptococcus pyogenes MGAS9429BFirm LS1636311,836,46761.57601012
211Streptococcus pyogenes NZ131BFirm LS2070711,815,78561.46501011
212Streptococcus pyogenes SSI-1BFirm LS30111,894,27561.46501011
213Streptococcus pyogenes str. ManfredoBFirm LS27011,841,27161.46501011
214Streptococcus sanguinis SK36BFirm LS1394212,388,43556.611713014
215Streptococcus suis 05ZYH33BFirm LS1715312,096,30958.9640209
216Streptococcus suis 98HAH33BFirm LS1715512,095,69858.96402010
217Streptococcus suis BM407BFirm LS3223722,170,80859.06402010
218Streptococcus suis GZ1187371N/AN/AN/AN/AN/AN/AN/AN/A
219Streptococcus suis P1/7BFirm LS35212,007,49158.7530209
220Streptococcus suis SC84BFirm LS3223912,095,89858.96402010
221Streptococcus thermophilus CNRZ1066BFirm LS1316311,796,22660.9750209
222Streptococcus thermophilus LMD-9BFirm LS1377331,864,17860.9320107
223Streptococcus thermophilus LMG 18311BFirm LS1316211,796,84660.9750209
224Streptococcus uberis 0140JBFirm LS35311,852,35263.48602010
225Symbiobacterium thermophilum IAM 14863BFirm LS1299413,566,13531.32413011034
226Syntrophothermus lipocalidus DSM 12680BFirm CC3787312,405,55949.03300016
227Thermincola sp. JR414671N/AN/AN/AN/AN/AN/AN/AN/A
228Thermoanaerobacter italicus Ab9BFirm CT3315712,451,06165.98701019
229Thermoanaerobacter mathranii subsp. mathranii str. A3BFirm CT3332912,306,09265.79801016
230Thermoanaerobacter pseudethanolicus ATCC 33223BFirm CT1390112,362,81665.56600011
231Thermoanaerobacter sp. X514BFirm CT1639412,457,25965.58701016
232Thermoanaerobacter tengcongensis MB4BFirm CT24912,689,44562.49801021
233Ureaplasma parvum serovar 3 str. ATCC 27815BFirm MM190871751,67974.5000000
234Ureaplasma parvum serovar 3 str. ATCC 700970BFirm MM1011751,71974.5000000
235Veillonella parvula DSM 2008BFirm CC2109112,132,14261.4321003

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