Genome Atlas - 3.0 (beta)

132 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Number of genes	Coding density	Bp/gene	Estimated # proteins	True proteins ratio

1	Bradyrhizobium japonicum USDA 110	BProt ARh	17	1	9,105,828	35.9	8,317	0.9	1,095	6,775	N/A
2	Methylobacterium nodulans ORS 2060	BProt ARh	20477	8	8,839,022	31.6	8,309	0.8	1,066	N/A	N/A
3	Bradyrhizobium sp. BTAi1	BProt ARh	16137	2	8,493,513	35.2	7,622	0.9	1,115	6,219	N/A
4	Rhizobium leguminosarum bv. viciae 3841	BProt ARh	344	7	7,751,309	39.1	7,285	0.9	1,066	5,919	N/A
5	Methylobacterium sp. 4-46	BProt ARh	18809	3	7,737,025	28.5	6,692	0.8	1,157	N/A	N/A
6	Azospirillum sp. B510	BProt AR	32551	7	7,599,738	32.4	6,309	0.9	1,209	N/A	N/A
7	Mesorhizobium loti MAFF303099	BProt ARh	18	3	7,596,297	37.5	7,281	0.9	1,044	5,842	N/A
8	Bradyrhizobium sp. ORS278	BProt ARh	19575	1	7,456,587	34.5	6,752	0.9	1,104	5,435	N/A
9	Rhizobium leguminosarum bv. trifolii WSM1325	BProt ARh	20097	6	7,418,122	39.2	7,001	0.9	1,060	N/A	N/A
10	Agrobacterium radiobacter K84	BProt ARh	13402	5	7,273,300	40.1	6,684	0.9	1,089	N/A	N/A
11	Methylobacterium radiotolerans JCM 2831	BProt ARh	18817	9	6,899,110	29.0	6,431	0.9	1,074	N/A	N/A
12	Rhizobium sp. NGR234	BProt ARh	21101	3	6,891,900	37.6	6,366	0.9	1,087	N/A	N/A
13	Methylobacterium extorquens AM1	BProt ARh	20	5	6,879,778	31.5	6,234	0.8	1,104	N/A	N/A
14	Rhizobium leguminosarum bv. trifolii WSM2304	BProt ARh	20179	5	6,872,702	38.8	6,415	0.9	1,073	N/A	N/A
15	Sinorhizobium medicae WSM419	BProt ARh	16304	4	6,817,576	38.8	6,213	0.9	1,101	5,163	N/A
16	Sinorhizobium meliloti 1021	BProt ARh	19	3	6,691,694	37.8	6,205	0.9	1,079	5,160	N/A
17	Rhizobium etli CFN 42	BProt ARh	13932	7	6,530,228	39.0	6,016	0.9	1,086	5,009	N/A
18	Rhizobium etli CIAT 652	BProt ARh	28021	4	6,448,048	38.7	6,109	0.9	1,056	N/A	N/A
19	Agrobacterium vitis S4	BProt ARh	13372	7	6,320,946	42.5	5,389	0.9	1,174	N/A	N/A
20	Methylobacterium chloromethanicum CM4	BProt ARh	19527	3	6,180,732	31.9	5,516	0.8	1,123	N/A	N/A
21	Sphingomonas wittichii RW1	BProt AS	17343	3	5,915,246	32.1	5,345	0.9	1,107	4,560	N/A
22	Caulobacter sp. K31	BProt AC	16306	3	5,889,399	32.7	5,438	0.9	1,083	N/A	N/A
23	Methylobacterium populi BJ001	BProt ARh	19559	3	5,848,997	30.6	5,365	0.9	1,090	N/A	N/A
24	Rhodopseudomonas palustris TIE-1	BProt ARh	20167	1	5,744,041	35.1	5,246	0.9	1,095	N/A	N/A
25	Agrobacterium tumefaciens str. C58	BProt ARh	283	4	5,673,465	41.0	5,301	0.9	1,072	4,473	N/A
26	Xanthobacter autotrophicus Py2	BProt ARh	15756	2	5,625,098	32.7	5,035	0.9	1,117	N/A	N/A
27	Rhodopseudomonas palustris BisB18	BProt ARh	15750	1	5,513,844	35.0	4,886	0.9	1,129	4,020	N/A
28	Rhodopseudomonas palustris BisA53	BProt ARh	15751	1	5,505,494	35.6	4,878	0.9	1,129	3,957	N/A
29	Methylobacterium extorquens PA1	BProt ARh	18637	1	5,471,154	31.8	4,829	0.8	1,133	N/A	N/A
30	Rhodopseudomonas palustris CGA009	BProt ARh	57	2	5,467,640	35.0	4,840	0.9	1,130	4,105	N/A
31	Rhodopseudomonas palustris HaA2	BProt ARh	15747	1	5,331,656	34.0	4,683	0.9	1,139	3,953	N/A
32	Paracoccus denitrificans PD1222	BProt AR	13020	3	5,236,194	33.2	5,077	0.9	1,032	4,261	N/A
33	Ochrobactrum anthropi ATCC 49188	BProt ARh	19485	6	5,205,777	43.9	4,799	0.9	1,087	4,064	N/A
34	Nitrobacter hamburgensis X14	BProt ARh	13473	4	5,011,522	38.4	4,326	0.8	1,159	3,332	N/A
35	Magnetospirillum magneticum AMB-1	BProt AR	16217	1	4,967,148	34.9	4,559	0.9	1,090	3,692	N/A
36	Chelativorans sp. BNC1	BProt ARh	10690	4	4,935,185	38.9	4,543	0.9	1,087	3,811	N/A
37	Rhodopseudomonas palustris BisB5	BProt ARh	15749	1	4,892,717	35.2	4,397	0.9	1,113	3,666	N/A
38	Starkeya novella DSM 506	BProt ARh	37659	1	4,765,023	32.1	4,431	0.9	1,075	N/A	N/A
39	Rhodobacter sphaeroides KD131	BProt AR	31111	4	4,711,139	30.9	4,569	0.9	1,032	N/A	N/A
40	Caulobacter segnis ATCC 21756	BProt AC	37277	1	4,655,622	32.3	4,139	0.9	1,125	N/A	N/A
41	Rhodobacter sphaeroides 2.4.1	BProt AR	56	7	4,603,060	31.2	4,242	0.9	1,088	3,580	N/A
42	Rhodobacter sphaeroides ATCC 17025	BProt AR	15755	6	4,557,127	31.8	4,333	0.9	1,053	3,670	N/A
43	Rhodobacter sphaeroides ATCC 17029	BProt AR	15754	3	4,489,380	31.0	4,132	0.9	1,088	3,521	N/A
44	Sphingobium japonicum UT26S	BProt AS	19949	5	4,424,862	35.1	4,394	0.9	1,012	N/A	N/A
45	Beijerinckia indica subsp. indica ATCC 9039	BProt ARh	20841	3	4,418,616	43.0	3,784	0.8	1,171	N/A	N/A
46	Dinoroseobacter shibae DFL 12	BProt AR	17417	6	4,417,868	34.5	4,187	0.9	1,057	N/A	N/A
47	Rhodospirillum rubrum ATCC 11170	BProt AR	58	2	4,406,557	34.6	3,841	0.9	1,147	3,420	N/A
48	Jannaschia sp. CCS1	BProt AR	12733	2	4,404,049	37.8	4,283	0.9	1,029	3,567	N/A
49	Phenylobacterium zucineum HLK1	BProt AC	19931	2	4,379,231	28.9	3,854	0.9	1,136	N/A	N/A
50	Rhodospirillum centenum SW	BProt AR	18307	1	4,355,548	29.5	4,041	0.9	1,078	N/A	N/A
51	Roseobacter denitrificans OCh 114	BProt AR	16426	5	4,331,234	41.1	4,144	0.9	1,046	3,411	N/A
52	Methylocella silvestris BL2	BProt ARh	20635	1	4,305,430	36.9	3,818	0.9	1,128	N/A	N/A
53	Novosphingobium aromaticivorans DSM 12444	BProt AS	204	3	4,233,314	34.9	3,937	0.9	1,076	3,294	N/A
54	Ruegeria sp. TM1040	BProt AR	13040	3	4,153,699	39.9	3,864	0.9	1,076	3,272	N/A
55	Caulobacter crescentus NA1000	BProt AC	32027	1	4,042,929	32.8	3,877	0.9	1,043	N/A	N/A
56	Caulobacter crescentus CB15	BProt AC	298	1	4,016,947	32.8	3,737	0.9	1,075	3,152	N/A
57	Gluconacetobacter diazotrophicus PAl 5	BProt AR	377	3	3,999,591	33.7	3,938	0.9	1,017	N/A	N/A
58	Acidiphilium cryptum JF-5	BProt AR	15753	9	3,963,080	32.9	3,559	0.9	1,114	3,121	N/A
59	Gluconacetobacter diazotrophicus PAl 5	BProt AR	21071	2	3,914,947	33.7	3,501	0.9	1,118	N/A	N/A
60	Parvibaculum lavamentivorans DS-1	BProt ARh	17639	1	3,914,745	37.7	3,636	0.9	1,077	N/A	N/A
61	Rhodobacter capsulatus SB 1003	BProt AR	55	2	3,871,920	33.4	3,642	0.9	1,064	N/A	N/A
62	Oligotropha carboxidovorans OM5	BProt ARh	28805	1	3,745,629	37.6	3,722	0.9	1,006	N/A	N/A
63	Hyphomonas neptunium ATCC 15444	BProt AR	15721	1	3,705,021	38.1	3,505	0.9	1,057	2,936	N/A
64	Hyphomicrobium denitrificans ATCC 51888	BProt ARh	33261	1	3,638,969	39.2	3,512	0.9	1,036	N/A	N/A
65	Hirschia baltica ATCC 49814	BProt AR	33191	2	3,540,114	54.8	3,187	0.9	1,111	N/A	N/A
66	Nitrobacter winogradskyi Nb-255	BProt ARh	13474	1	3,402,093	38.0	3,122	0.8	1,090	2,527	N/A
67	Sphingopyxis alaskensis RB2256	BProt AS	13907	2	3,373,713	34.5	3,195	0.9	1,056	2,686	N/A
68	Maricaulis maris MCS10	BProt AR	17333	1	3,368,780	37.3	3,063	0.9	1,100	2,610	N/A
69	Acetobacter pasteurianus IFO 3283-01	BProt AR	31129	7	3,340,249	46.9	3,050	0.9	1,097	N/A	N/A
70	Acetobacter pasteurianus IFO 3283-26	BProt AR	31137	7	3,339,683	46.9	3,048	0.9	1,098	N/A	N/A
71	Acetobacter pasteurianus IFO 3283-03	BProt AR	31131	7	3,339,669	46.9	3,048	0.9	1,098	N/A	N/A
72	Acetobacter pasteurianus IFO 3283-22	BProt AR	31135	7	3,339,649	46.9	3,048	0.9	1,098	N/A	N/A
73	Acetobacter pasteurianus IFO 3283-07	BProt AR	31133	7	3,338,426	46.9	3,047	0.9	1,098	N/A	N/A
74	Brucella microti CCM 4915	BProt ARh	32233	2	3,337,369	42.7	3,287	0.9	1,016	N/A	N/A
75	Acetobacter pasteurianus IFO 3283-32	BProt AR	31139	7	3,337,040	46.9	3,046	0.9	1,098	N/A	N/A
76	Acetobacter pasteurianus IFO 3283-12	BProt AR	32203	7	3,336,990	46.9	3,046	0.9	1,098	N/A	N/A
77	Brucella suis ATCC 23445	BProt ARh	20371	2	3,324,607	42.8	3,241	0.8	1,027	N/A	N/A
78	Brucella suis 1330	BProt ARh	320	2	3,315,175	42.7	3,273	0.8	1,014	2,519	N/A
79	Brucella canis ATCC 23365	BProt ARh	20243	2	3,312,769	42.8	3,251	0.8	1,020	N/A	N/A
80	Brucella melitensis ATCC 23457	BProt ARh	30561	2	3,311,219	42.8	3,136	0.8	1,057	N/A	N/A
81	Brucella melitensis bv. 1 str. 16M	BProt ARh	180	2	3,294,931	42.8	3,198	0.9	1,030	2,639	N/A
82	Brucella abortus bv. 1 str. 9-941	BProt ARh	9619	2	3,286,445	42.8	3,085	0.8	1,066	2,415	N/A
83	Brucella abortus S19	BProt ARh	18999	2	3,283,936	42.8	3,000	0.8	1,095	N/A	N/A
84	Brucella melitensis biovar Abortus 2308	BProt ARh	16203	2	3,278,307	42.8	3,350	0.9	979	2,415	N/A
85	Brucella ovis ATCC 25840	BProt ARh	12514	2	3,275,590	42.8	2,892	0.8	1,135	2,398	N/A
86	Acetobacter pasteurianus IFO 3283-01-42C	BProt AR	31141	7	3,247,995	46.9	2,984	0.9	1,090	N/A	N/A
87	Erythrobacter litoralis HTCC2594	BProt AS	13480	1	3,052,398	36.9	3,011	0.9	1,014	2,441	N/A
88	Gluconobacter oxydans 621H	BProt AR	13325	6	2,922,384	39.2	2,664	0.9	1,100	2,319	N/A
89	Candidatus Puniceispirillum marinum IMCC1322	BProt AS	28081	1	2,753,527	51.2	2,546	0.9	1,082	N/A	N/A
90	Granulibacter bethesdensis CGDNIH1	BProt AR	17111	1	2,708,355	40.9	2,437	0.9	1,111	2,122	N/A
91	Bartonella tribocorum CIP 105476	BProt ARh	28109	2	2,642,404	61.2	2,154	0.7	1,227	N/A	N/A
92	Bartonella grahamii as4aup	BProt ARh	34873	2	2,369,520	62.0	1,768	0.7	1,343	N/A	N/A
93	Zymomonas mobilis subsp. mobilis NCIMB 11163	BProt AS	34821	4	2,223,520	53.4	1,884	0.9	1,181	N/A	N/A
94	Orientia tsutsugamushi str. Boryong	BProt ARi	16180	1	2,127,051	69.5	2,179	0.8	976	888	N/A
95	Zymomonas mobilis subsp. mobilis ZM4	BProt AS	12354	1	2,056,416	53.7	1,998	0.9	1,029	1,576	N/A
96	Orientia tsutsugamushi str. Ikeda	BProt ARi	18983	1	2,008,987	69.5	1,967	0.7	1,021	N/A	N/A
97	Bartonella henselae str. Houston-1	BProt ARh	196	1	1,931,047	61.8	1,612	0.8	1,198	1,212	N/A
98	Rickettsia felis URRWXCal2	BProt ARi	13884	3	1,587,240	67.5	1,512	0.8	1,051	1,297	N/A
99	Bartonella quintana str. Toulouse	BProt ARh	44	1	1,581,384	61.2	1,308	0.8	1,209	1,026	N/A
100	Rickettsia bellii OSU 85-389	BProt ARi	17237	1	1,528,980	68.4	1,476	0.8	1,036	N/A	N/A
101	Rickettsia bellii RML369-C	BProt ARi	13996	1	1,522,076	68.3	1,429	0.8	1,065	1,232	N/A
102	Ehrlichia ruminantium str. Welgevonden	BProt ARi	9614	1	1,516,355	72.5	920	0.6	1,648	836	N/A
103	Ehrlichia ruminantium str. Welgevonden	BProt ARi	13355	1	1,512,977	72.5	958	0.6	1,579	867	N/A
104	Ehrlichia ruminantium str. Gardel	BProt ARi	13356	1	1,499,920	72.5	950	0.6	1,579	860	N/A
105	Wolbachia endosymbiont of Culex quinquefasciatus Pel	BProt ARi	30313	1	1,482,455	65.8	1,385	0.9	1,070	N/A	N/A
106	Anaplasma phagocytophilum HZ	BProt ARi	336	1	1,471,282	58.4	1,264	0.7	1,164	847	N/A
107	Wolbachia sp. wRi	BProt ARi	33273	1	1,445,873	64.8	1,150	0.8	1,257	N/A	N/A
108	Bartonella bacilliformis KC583	BProt ARh	16249	1	1,445,021	61.8	1,283	0.8	1,126	1,057	N/A
109	Rickettsia massiliae MTU5	BProt ARi	18271	2	1,376,184	67.5	980	0.7	1,404	N/A	N/A
110	Ehrlichia canis str. Jake	BProt ARi	10694	1	1,315,030	71.0	925	0.7	1,422	837	N/A
111	Rickettsia peacockii str. Rustic	BProt ARi	31309	2	1,314,898	67.4	947	0.7	1,389	N/A	N/A
112	Candidatus Pelagibacter ubique HTCC1062	BProt ARi	13989	1	1,308,759	70.3	1,354	1.0	967	1,190	N/A
113	Rickettsia africae ESF-5	BProt ARi	18269	2	1,290,917	67.6	1,041	0.7	1,240	N/A	N/A
114	Rickettsia conorii str. Malish 7	BProt ARi	42	1	1,268,755	67.6	1,374	0.8	923	996	N/A
115	Rickettsia rickettsii str. Iowa	BProt ARi	19943	1	1,268,175	67.5	1,384	0.8	916	N/A	N/A
116	Wolbachia endosymbiont of Drosophila melanogaster	BProt ARi	272	1	1,267,782	64.8	1,195	0.8	1,061	888	N/A
117	Rickettsia rickettsii str. 'Sheila Smith'	BProt ARi	9636	1	1,257,710	67.5	1,345	0.8	935	N/A	N/A
118	Rickettsia akari str. Hartford	BProt ARi	12953	1	1,231,060	67.7	1,259	0.8	978	N/A	N/A
119	Candidatus Liberibacter asiaticus str. psy62	BProt ARh	29835	1	1,226,704	63.5	1,109	0.8	1,106	N/A	N/A
120	Anaplasma centrale str. Israel	BProt ARi	32765	1	1,206,806	50.0	925	0.8	1,305	N/A	N/A
121	Anaplasma marginale str. Florida	BProt ARi	16369	1	1,202,435	50.2	942	0.9	1,277	N/A	N/A
122	Anaplasma marginale str. St. Maries	BProt ARi	40	1	1,197,687	50.2	949	0.9	1,262	854	N/A
123	Ehrlichia chaffeensis str. Arkansas	BProt ARi	325	1	1,176,248	69.9	1,105	0.8	1,065	828	N/A
124	Rickettsia canadensis str. McKiel	BProt ARi	12952	1	1,159,772	68.9	1,093	0.7	1,061	N/A	N/A
125	Rickettsia prowazekii Rp22	BProt ARi	19813	1	1,111,612	71.0	952	0.8	1,168	N/A	N/A
126	Rickettsia prowazekii str. Madrid E	BProt ARi	43	1	1,111,523	71.0	834	0.8	1,333	834	N/A
127	Rickettsia typhi str. Wilmington	BProt ARi	10679	1	1,111,496	71.1	838	0.8	1,326	801	N/A
128	Wolbachia endosymbiont strain TRS of Brugia malayi	BProt ARi	12475	1	1,080,084	65.8	805	0.7	1,342	652	N/A
129	Neorickettsia risticii str. Illinois	BProt ARi	19099	1	879,977	58.7	898	0.9	980	N/A	N/A
130	Neorickettsia sennetsu str. Miyayama	BProt ARi	357	1	859,006	58.9	932	0.9	922	693	N/A
131	Methylobacterium extorquens DM4		16093	3	180,083	35.0	5,947	0.8	1,013	N/A	N/A
132	Candidatus Hodgkinia cicadicola Dsem	BProt AC	32135	1	143,795	41.6	169	0.9	851	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini