Genome Atlas - 3.0 (beta)

132 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	% Global Direct Repeats	% Global Inverted Repeats	% Local Direct Repeats	% Local Inverted Repeats	% Local Mirror Repeats	% Local Everted Repeats	% Simple Repeats

1	Anaplasma marginale str. St. Maries	BProt ARi	40	1	1,197,687	50.2	5.60	4.80	3.60	1.60	2.10	1.20	0.20
2	Anaplasma marginale str. Florida	BProt ARi	16369	1	1,202,435	50.2	5.60	4.50	3.70	1.60	2.00	1.20	0.20
3	Anaplasma centrale str. Israel	BProt ARi	32765	1	1,206,806	50.0	6.50	4.80	4.00	1.70	2.20	1.20	0.00
4	Anaplasma phagocytophilum HZ	BProt ARi	336	1	1,471,282	58.4	12.50	10.50	3.90	2.10	3.00	1.70	0.20
5	Neorickettsia sennetsu str. Miyayama	BProt ARi	357	1	859,006	58.9	0.70	0.10	3.50	2.20	2.90	1.90	0.20
6	Neorickettsia risticii str. Illinois	BProt ARi	19099	1	879,977	58.7	1.30	0.10	4.00	2.30	3.10	2.00	0.20
7	Candidatus Puniceispirillum marinum IMCC1322	BProt AS	28081	1	2,753,527	51.2	0.90	0.40	4.40	2.50	2.00	1.50	0.00
8	Hirschia baltica ATCC 49814	BProt AR	33191	2	3,540,114	54.8	0.00	0.00	0.09	2.80	2.09	1.59	0.00
9	Roseobacter denitrificans OCh 114	BProt AR	16426	5	4,331,234	41.1	1.26	0.87	4.59	2.99	2.49	1.99	0.30
10	Jannaschia sp. CCS1	BProt AR	12733	2	4,404,049	37.8	0.78	0.49	6.06	3.29	3.38	2.69	0.40
11	Ruegeria sp. TM1040	BProt AR	13040	3	4,153,699	39.9	1.52	1.60	4.92	3.34	2.62	2.18	0.30
12	Ochrobactrum anthropi ATCC 49188	BProt ARh	19485	6	5,205,777	43.9	1.79	1.53	4.27	3.53	2.34	2.05	0.30
13	Agrobacterium vitis S4	BProt ARh	13372	7	6,320,946	42.5	2.88	2.08	4.81	3.60	2.34	2.02	0.30
14	Acetobacter pasteurianus IFO 3283-26	BProt AR	31137	7	3,339,683	46.9	8.51	7.92	4.53	3.73	2.07	1.59	0.27
15	Acetobacter pasteurianus IFO 3283-03	BProt AR	31131	7	3,339,669	46.9	8.51	7.92	4.53	3.73	2.07	1.59	0.28
16	Acetobacter pasteurianus IFO 3283-22	BProt AR	31135	7	3,339,649	46.9	8.50	7.92	4.53	3.73	2.07	1.59	0.27
17	Acetobacter pasteurianus IFO 3283-07	BProt AR	31133	7	3,338,426	46.9	8.41	7.92	4.53	3.73	2.07	1.59	0.28
18	Acetobacter pasteurianus IFO 3283-12	BProt AR	32203	7	3,336,990	46.9	8.42	7.93	4.53	3.73	2.07	1.59	0.27
19	Acetobacter pasteurianus IFO 3283-32	BProt AR	31139	7	3,337,040	46.9	8.42	7.93	4.53	3.73	2.07	1.59	0.01
20	Acetobacter pasteurianus IFO 3283-01	BProt AR	31129	7	3,340,249	46.9	8.52	8.02	4.53	3.73	2.07	1.59	0.01
21	Acetobacter pasteurianus IFO 3283-01-42C	BProt AR	31141	7	3,247,995	46.9	8.07	7.73	4.53	3.73	2.07	1.59	0.28
22	Brucella melitensis bv. 1 str. 16M	BProt ARh	180	2	3,294,931	42.8	1.60	1.22	4.93	3.80	2.64	2.10	0.30
23	Brucella suis 1330	BProt ARh	320	2	3,315,175	42.7	1.63	1.35	4.95	3.80	2.64	2.10	0.30
24	Brucella abortus bv. 1 str. 9-941	BProt ARh	9619	2	3,286,445	42.8	1.78	1.19	4.89	3.80	2.64	2.14	0.30
25	Brucella melitensis biovar Abortus 2308	BProt ARh	16203	2	3,278,307	42.8	1.85	1.19	4.89	3.80	2.64	2.10	0.30
26	Brucella abortus S19	BProt ARh	18999	2	3,283,936	42.8	1.68	1.19	4.89	3.80	2.64	2.14	0.30
27	Brucella canis ATCC 23365	BProt ARh	20243	2	3,312,769	42.8	1.56	1.31	4.95	3.80	2.64	2.10	0.30
28	Brucella melitensis ATCC 23457	BProt ARh	30561	2	3,311,219	42.8	1.63	1.48	4.89	3.80	2.64	2.10	0.30
29	Brucella microti CCM 4915	BProt ARh	32233	2	3,337,369	42.7	1.95	1.53	4.99	3.80	2.64	2.10	0.30
30	Brucella suis ATCC 23445	BProt ARh	20371	2	3,324,607	42.8	1.91	1.37	4.97	3.84	2.64	2.08	0.30
31	Brucella ovis ATCC 25840	BProt ARh	12514	2	3,275,590	42.8	2.41	1.93	4.86	3.86	2.60	2.10	0.30
32	Gluconobacter oxydans 621H	BProt AR	13325	6	2,922,384	39.2	3.17	3.92	5.86	3.87	3.16	2.47	0.38
33	Granulibacter bethesdensis CGDNIH1	BProt AR	17111	1	2,708,355	40.9	1.90	1.10	5.50	3.90	2.60	2.00	0.40
34	Agrobacterium tumefaciens str. C58	BProt ARh	283	4	5,673,465	41.0	1.45	1.05	5.27	3.94	2.82	2.39	0.37
35	Bartonella quintana str. Toulouse	BProt ARh	44	1	1,581,384	61.2	4.30	0.70	5.70	4.00	4.10	3.00	0.40
36	Hyphomonas neptunium ATCC 15444	BProt AR	15721	1	3,705,021	38.1	1.10	1.00	6.80	4.00	3.70	2.80	0.50
37	Agrobacterium radiobacter K84	BProt ARh	13402	5	7,273,300	40.1	1.68	1.35	5.76	4.01	3.05	2.53	0.35
38	Chelativorans sp. BNC1	BProt ARh	10690	4	4,935,185	38.9	1.83	1.12	5.12	4.03	3.32	2.92	0.29
39	Beijerinckia indica subsp. indica ATCC 9039	BProt ARh	20841	3	4,418,616	43.0	2.20	1.76	4.49	4.17	2.40	1.91	0.39
40	Zymomonas mobilis subsp. mobilis ZM4	BProt AS	12354	1	2,056,416	53.7	2.30	0.60	4.60	4.30	3.20	2.50	0.30
41	Candidatus Liberibacter asiaticus str. psy62	BProt ARh	29835	1	1,226,704	63.5	N/A	N/A	6.00	4.30	4.60	3.40	0.00
42	Zymomonas mobilis subsp. mobilis NCIMB 11163	BProt AS	34821	4	2,223,520	53.4	1.84	0.55	4.79	4.34	3.24	2.63	0.29
43	Sinorhizobium medicae WSM419	BProt ARh	16304	4	6,817,576	38.8	3.44	1.45	5.39	4.38	3.34	2.86	0.36
44	Bartonella bacilliformis KC583	BProt ARh	16249	1	1,445,021	61.8	7.30	3.20	6.40	4.40	4.30	3.20	0.40
45	Bartonella henselae str. Houston-1	BProt ARh	196	1	1,931,047	61.8	10.60	3.40	6.70	4.50	4.60	3.40	0.50
46	Maricaulis maris MCS10	BProt AR	17333	1	3,368,780	37.3	1.80	1.40	6.90	4.60	3.70	3.10	0.50
47	Hyphomicrobium denitrificans ATCC 51888	BProt ARh	33261	1	3,638,969	39.2	3.50	0.50	6.40	4.60	3.90	3.10	0.40
48	Wolbachia endosymbiont of Drosophila melanogaster	BProt ARi	272	1	1,267,782	64.8	13.90	12.20	7.20	4.70	5.30	3.40	0.30
49	Wolbachia endosymbiont strain TRS of Brugia malayi	BProt ARi	12475	1	1,080,084	65.8	4.80	4.20	6.30	4.70	5.20	3.60	0.30
50	Wolbachia endosymbiont of Culex quinquefasciatus Pel	BProt ARi	30313	1	1,482,455	65.8	18.70	13.20	7.50	4.70	5.90	3.50	0.40
51	Wolbachia sp. wRi	BProt ARi	33273	1	1,445,873	64.8	26.30	16.20	7.20	4.70	5.30	3.50	0.00
52	Bartonella grahamii as4aup	BProt ARh	34873	2	2,369,520	62.0	16.89	8.23	7.22	4.72	4.74	3.41	0.00
53	Bartonella tribocorum CIP 105476	BProt ARh	28109	2	2,642,404	61.2	24.41	12.31	7.55	4.73	4.80	3.20	0.51
54	Rhizobium leguminosarum bv. trifolii WSM1325	BProt ARh	20097	6	7,418,122	39.2	2.23	1.78	6.57	4.79	3.44	2.97	0.44
55	Parvibaculum lavamentivorans DS-1	BProt ARh	17639	1	3,914,745	37.7	1.00	3.80	7.70	4.90	4.60	3.50	0.50
56	Rhizobium leguminosarum bv. viciae 3841	BProt ARh	344	7	7,751,309	39.1	2.17	2.06	6.60	4.90	3.41	2.97	0.47
57	Rhizobium etli CFN 42	BProt ARh	13932	7	6,530,228	39.0	2.03	1.91	6.61	4.98	3.55	3.11	0.46
58	Erythrobacter litoralis HTCC2594	BProt AS	13480	1	3,052,398	36.9	4.00	0.60	7.40	5.00	4.10	3.60	0.50
59	Nitrobacter hamburgensis X14	BProt ARh	13473	4	5,011,522	38.4	7.80	6.10	6.79	5.10	4.03	3.43	0.47
60	Sinorhizobium meliloti 1021	BProt ARh	19	3	6,691,694	37.8	3.26	3.33	6.44	5.16	3.85	3.37	0.43
61	Oligotropha carboxidovorans OM5	BProt ARh	28805	1	3,745,629	37.6	2.00	1.00	7.40	5.20	4.30	3.60	0.50
62	Dinoroseobacter shibae DFL 12	BProt AR	17417	6	4,417,868	34.5	1.69	0.99	9.81	5.26	5.55	4.24	0.66
63	Rhizobium etli CIAT 652	BProt ARh	28021	4	6,448,048	38.7	2.77	1.99	7.06	5.27	3.78	3.25	0.48
64	Rhizobium leguminosarum bv. trifolii WSM2304	BProt ARh	20179	5	6,872,702	38.8	2.15	1.62	7.14	5.28	3.71	3.11	0.48
65	Mesorhizobium loti MAFF303099	BProt ARh	18	3	7,596,297	37.5	3.50	2.33	7.81	5.48	4.10	3.61	0.57
66	Nitrobacter winogradskyi Nb-255	BProt ARh	13474	1	3,402,093	38.0	6.90	6.60	7.00	5.50	4.00	3.50	0.50
67	Rhizobium sp. NGR234	BProt ARh	21101	3	6,891,900	37.6	5.47	3.79	7.09	5.52	4.05	3.58	0.16
68	Novosphingobium aromaticivorans DSM 12444	BProt AS	204	3	4,233,314	34.9	1.49	0.57	8.21	5.60	4.97	4.21	0.59
69	Candidatus Hodgkinia cicadicola Dsem	BProt AC	32135	1	143,795	41.6	0.40	0.00	10.40	5.90	4.30	2.20	0.90
70	Magnetospirillum magneticum AMB-1	BProt AR	16217	1	4,967,148	34.9	6.00	4.60	11.40	6.40	5.40	4.50	0.80
71	Methylobacterium extorquens DM4		16093	3	180,083	35.0	1.48	1.41	8.86	6.69	6.10	4.82	0.39
72	Bradyrhizobium japonicum USDA 110	BProt ARh	17	1	9,105,828	35.9	5.20	4.60	9.10	6.90	5.10	4.50	0.60
73	Methylocella silvestris BL2	BProt ARh	20635	1	4,305,430	36.9	1.30	0.50	8.70	6.90	5.60	4.90	0.50
74	Sphingobium japonicum UT26S	BProt AS	19949	5	4,424,862	35.1	N/A	N/A	9.82	6.92	5.82	4.69	0.57
75	Ehrlichia chaffeensis str. Arkansas	BProt ARi	325	1	1,176,248	69.9	6.70	1.80	11.10	7.00	9.50	5.90	0.60
76	Rhodopseudomonas palustris TIE-1	BProt ARh	20167	1	5,744,041	35.1	2.80	1.90	10.20	7.20	5.80	5.20	0.70
77	Bradyrhizobium sp. BTAi1	BProt ARh	16137	2	8,493,513	35.2	5.36	3.29	9.68	7.21	5.54	4.75	0.59
78	Rhodobacter capsulatus SB 1003	BProt AR	55	2	3,871,920	33.4	2.42	2.22	13.03	7.28	6.87	5.29	0.04
79	Paracoccus denitrificans PD1222	BProt AR	13020	3	5,236,194	33.2	3.27	2.37	12.07	7.35	6.28	5.62	0.92
80	Rhodospirillum rubrum ATCC 11170	BProt AR	58	2	4,406,557	34.6	2.57	1.65	11.35	7.38	5.47	4.49	0.79
81	Rhodopseudomonas palustris CGA009	BProt ARh	57	2	5,467,640	35.0	2.40	1.80	10.30	7.39	5.90	5.30	0.70
82	Xanthobacter autotrophicus Py2	BProt ARh	15756	2	5,625,098	32.7	4.86	5.82	11.70	7.56	6.70	5.73	0.89
83	Gluconacetobacter diazotrophicus PAl 5	BProt AR	377	3	3,999,591	33.7	7.72	8.38	11.43	7.58	6.94	6.16	0.89
84	Ehrlichia canis str. Jake	BProt ARi	10694	1	1,315,030	71.0	3.90	1.30	12.50	7.60	10.90	6.90	0.60
85	Orientia tsutsugamushi str. Boryong	BProt ARi	16180	1	2,127,051	69.5	53.40	54.20	9.60	7.60	7.90	5.80	0.70
86	Gluconacetobacter diazotrophicus PAl 5	BProt AR	21071	2	3,914,947	33.7	6.56	6.26	11.67	7.68	7.08	6.17	0.90
87	Orientia tsutsugamushi str. Ikeda	BProt ARi	18983	1	2,008,987	69.5	50.80	50.80	9.60	7.70	7.90	5.70	0.60
88	Rhodopseudomonas palustris BisB5	BProt ARh	15749	1	4,892,717	35.2	2.90	2.00	11.10	7.80	6.10	5.40	0.70
89	Rhodopseudomonas palustris BisA53	BProt ARh	15751	1	5,505,494	35.6	4.10	3.30	10.80	7.80	6.00	5.30	0.80
90	Rhodobacter sphaeroides ATCC 17025	BProt AR	15755	6	4,557,127	31.8	3.03	4.71	11.81	7.84	7.39	6.40	0.87
91	Caulobacter crescentus NA1000	BProt AC	32027	1	4,042,929	32.8	3.50	2.50	11.80	7.90	6.40	5.70	0.90
92	Caulobacter crescentus CB15	BProt AC	298	1	4,016,947	32.8	3.50	2.40	11.90	8.00	6.40	5.70	0.90
93	Rickettsia akari str. Hartford	BProt ARi	12953	1	1,231,060	67.7	3.00	2.20	9.10	8.00	7.70	5.90	0.50
94	Bradyrhizobium sp. ORS278	BProt ARh	19575	1	7,456,587	34.5	4.00	3.40	10.70	8.00	6.20	5.50	0.70
95	Rickettsia peacockii str. Rustic	BProt ARi	31309	2	1,314,898	67.4	7.06	6.77	9.40	8.06	7.58	5.66	0.01
96	Caulobacter segnis ATCC 21756	BProt AC	37277	1	4,655,622	32.3	4.00	1.80	12.60	8.20	7.00	6.20	0.00
97	Rickettsia rickettsii str. 'Sheila Smith'	BProt ARi	9636	1	1,257,710	67.5	3.40	2.80	9.20	8.30	7.80	6.00	0.50
98	Rickettsia rickettsii str. Iowa	BProt ARi	19943	1	1,268,175	67.5	3.30	2.80	9.20	8.30	7.90	6.00	0.50
99	Rickettsia africae ESF-5	BProt ARi	18269	2	1,290,917	67.6	3.64	2.68	9.40	8.30	7.90	5.99	0.51
100	Caulobacter sp. K31	BProt AC	16306	3	5,889,399	32.7	5.03	3.80	12.59	8.36	6.79	5.83	0.88
101	Rickettsia conorii str. Malish 7	BProt ARi	42	1	1,268,755	67.6	3.60	3.10	9.40	8.40	7.80	5.90	0.50
102	Rickettsia massiliae MTU5	BProt ARi	18271	2	1,376,184	67.5	5.30	4.25	9.33	8.48	7.79	5.88	0.50
103	Methylobacterium chloromethanicum CM4	BProt ARh	19527	3	6,180,732	31.9	5.08	4.18	11.94	8.50	7.56	6.50	0.88
104	Rickettsia canadensis str. McKiel	BProt ARi	12952	1	1,159,772	68.9	1.50	0.70	9.80	8.50	8.60	6.80	0.50
105	Rhodopseudomonas palustris BisB18	BProt ARh	15750	1	5,513,844	35.0	5.50	3.50	11.40	8.50	6.60	5.90	0.80
106	Rickettsia bellii RML369-C	BProt ARi	13996	1	1,522,076	68.3	7.20	6.40	10.60	8.60	8.80	6.60	0.50
107	Rickettsia bellii OSU 85-389	BProt ARi	17237	1	1,528,980	68.4	7.10	6.60	10.60	8.60	8.70	6.60	0.60
108	Sphingopyxis alaskensis RB2256	BProt AS	13907	2	3,373,713	34.5	2.28	2.38	10.95	8.65	6.67	5.87	0.70
109	Methylobacterium extorquens PA1	BProt ARh	18637	1	5,471,154	31.8	4.90	2.70	12.30	8.70	7.70	6.70	0.90
110	Rhodobacter sphaeroides ATCC 17029	BProt AR	15754	3	4,489,380	31.0	2.90	0.58	13.61	8.78	8.61	7.27	0.87
111	Rhodobacter sphaeroides KD131	BProt AR	31111	4	4,711,139	30.9	2.91	1.63	13.55	8.80	8.57	7.36	0.94
112	Rhodobacter sphaeroides 2.4.1	BProt AR	56	7	4,603,060	31.2	2.14	0.72	13.47	8.81	8.55	7.28	0.85
113	Methylobacterium extorquens AM1	BProt ARh	20	5	6,879,778	31.5	5.21	4.51	12.37	8.84	7.87	6.83	0.84
114	Rickettsia felis URRWXCal2	BProt ARi	13884	3	1,587,240	67.5	8.96	8.43	9.86	8.88	8.18	6.14	0.59
115	Azospirillum sp. B510	BProt AR	32551	7	7,599,738	32.4	4.47	5.45	14.01	8.97	7.94	6.90	0.90
116	Acidiphilium cryptum JF-5	BProt AR	15753	9	3,963,080	32.9	2.97	3.08	14.67	9.26	8.82	6.67	0.99
117	Rhodopseudomonas palustris HaA2	BProt ARh	15747	1	5,331,656	34.0	3.10	2.30	12.80	9.30	7.30	6.40	0.90
118	Candidatus Pelagibacter ubique HTCC1062	BProt ARi	13989	1	1,308,759	70.3	1.30	0.00	14.60	9.40	12.60	8.50	0.80
119	Rickettsia typhi str. Wilmington	BProt ARi	10679	1	1,111,496	71.1	0.40	0.00	11.70	9.50	10.60	8.60	0.60
120	Rickettsia prowazekii str. Madrid E	BProt ARi	43	1	1,111,523	71.0	0.40	0.00	12.00	9.60	10.70	8.40	0.60
121	Rickettsia prowazekii Rp22	BProt ARi	19813	1	1,111,612	71.0	0.40	0.00	12.00	9.60	10.70	8.40	0.60
122	Methylobacterium nodulans ORS 2060	BProt ARh	20477	8	8,839,022	31.6	12.15	11.51	12.53	9.61	8.32	7.17	0.86
123	Starkeya novella DSM 506	BProt ARh	37659	1	4,765,023	32.1	2.90	2.00	13.90	9.70	8.10	7.10	1.00
124	Methylobacterium populi BJ001	BProt ARh	19559	3	5,848,997	30.6	4.89	3.67	14.16	9.87	8.87	7.77	1.00
125	Ehrlichia ruminantium str. Welgevonden	BProt ARi	9614	1	1,516,355	72.5	6.20	1.60	14.90	10.40	13.40	9.30	0.70
126	Ehrlichia ruminantium str. Welgevonden	BProt ARi	13355	1	1,512,977	72.5	5.90	1.60	14.90	10.40	13.40	9.30	0.70
127	Phenylobacterium zucineum HLK1	BProt AC	19931	2	4,379,231	28.9	3.05	2.02	16.92	10.46	10.77	9.90	1.25
128	Ehrlichia ruminantium str. Gardel	BProt ARi	13356	1	1,499,920	72.5	4.80	1.50	14.90	10.50	13.40	9.20	0.70
129	Sphingomonas wittichii RW1	BProt AS	17343	3	5,915,246	32.1	3.43	3.17	14.54	10.74	8.74	7.87	0.94
130	Rhodospirillum centenum SW	BProt AR	18307	1	4,355,548	29.5	3.00	2.00	17.00	11.10	10.50	9.70	1.20
131	Methylobacterium radiotolerans JCM 2831	BProt ARh	18817	9	6,899,110	29.0	3.87	3.08	17.05	12.47	11.17	10.26	1.23
132	Methylobacterium sp. 4-46	BProt ARh	18809	3	7,737,025	28.5	7.73	6.69	19.39	14.42	13.32	11.82	1.29

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini