Genome Atlas - 3.0 (beta)

132 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Sigma 54 Factors	Sigma 70 Factors	ECF Factors

1	Candidatus Hodgkinia cicadicola Dsem	BProt AC	32135	1	143,795	41.6	N/A	N/A	N/A
2	Methylobacterium extorquens DM4		16093	3	180,083	35.0	N/A	N/A	N/A
3	Neorickettsia sennetsu str. Miyayama	BProt ARi	357	1	859,006	58.9	N/A	2	N/A
4	Neorickettsia risticii str. Illinois	BProt ARi	19099	1	879,977	58.7	N/A	2	N/A
5	Wolbachia endosymbiont strain TRS of Brugia malayi	BProt ARi	12475	1	1,080,084	65.8	N/A	2	N/A
6	Rickettsia typhi str. Wilmington	BProt ARi	10679	1	1,111,496	71.1	N/A	2	N/A
7	Rickettsia prowazekii str. Madrid E	BProt ARi	43	1	1,111,523	71.0	N/A	2	N/A
8	Rickettsia prowazekii Rp22	BProt ARi	19813	1	1,111,612	71.0	N/A	2	N/A
9	Rickettsia canadensis str. McKiel	BProt ARi	12952	1	1,159,772	68.9	N/A	2	N/A
10	Ehrlichia chaffeensis str. Arkansas	BProt ARi	325	1	1,176,248	69.9	N/A	2	N/A
11	Anaplasma marginale str. St. Maries	BProt ARi	40	1	1,197,687	50.2	N/A	2	N/A
12	Anaplasma marginale str. Florida	BProt ARi	16369	1	1,202,435	50.2	N/A	2	N/A
13	Anaplasma centrale str. Israel	BProt ARi	32765	1	1,206,806	50.0	N/A	2	N/A
14	Candidatus Liberibacter asiaticus str. psy62	BProt ARh	29835	1	1,226,704	63.5	N/A	2	N/A
15	Rickettsia akari str. Hartford	BProt ARi	12953	1	1,231,060	67.7	N/A	2	N/A
16	Rickettsia rickettsii str. 'Sheila Smith'	BProt ARi	9636	1	1,257,710	67.5	N/A	2	N/A
17	Wolbachia endosymbiont of Drosophila melanogaster	BProt ARi	272	1	1,267,782	64.8	N/A	2	N/A
18	Rickettsia rickettsii str. Iowa	BProt ARi	19943	1	1,268,175	67.5	N/A	2	N/A
19	Rickettsia conorii str. Malish 7	BProt ARi	42	1	1,268,755	67.6	N/A	2	N/A
20	Rickettsia africae ESF-5	BProt ARi	18269	2	1,290,917	67.6	N/A	2	N/A
21	Candidatus Pelagibacter ubique HTCC1062	BProt ARi	13989	1	1,308,759	70.3	N/A	2	N/A
22	Rickettsia peacockii str. Rustic	BProt ARi	31309	2	1,314,898	67.4	N/A	2	N/A
23	Ehrlichia canis str. Jake	BProt ARi	10694	1	1,315,030	71.0	N/A	2	N/A
24	Rickettsia massiliae MTU5	BProt ARi	18271	2	1,376,184	67.5	N/A	2	N/A
25	Bartonella bacilliformis KC583	BProt ARh	16249	1	1,445,021	61.8	N/A	3	N/A
26	Wolbachia sp. wRi	BProt ARi	33273	1	1,445,873	64.8	N/A	2	N/A
27	Anaplasma phagocytophilum HZ	BProt ARi	336	1	1,471,282	58.4	N/A	2	N/A
28	Wolbachia endosymbiont of Culex quinquefasciatus Pel	BProt ARi	30313	1	1,482,455	65.8	N/A	2	N/A
29	Ehrlichia ruminantium str. Gardel	BProt ARi	13356	1	1,499,920	72.5	N/A	2	N/A
30	Ehrlichia ruminantium str. Welgevonden	BProt ARi	13355	1	1,512,977	72.5	N/A	2	N/A
31	Ehrlichia ruminantium str. Welgevonden	BProt ARi	9614	1	1,516,355	72.5	N/A	2	N/A
32	Rickettsia bellii RML369-C	BProt ARi	13996	1	1,522,076	68.3	N/A	2	N/A
33	Rickettsia bellii OSU 85-389	BProt ARi	17237	1	1,528,980	68.4	N/A	1	N/A
34	Bartonella quintana str. Toulouse	BProt ARh	44	1	1,581,384	61.2	N/A	3	1
35	Rickettsia felis URRWXCal2	BProt ARi	13884	3	1,587,240	67.5	N/A	2	N/A
36	Bartonella henselae str. Houston-1	BProt ARh	196	1	1,931,047	61.8	N/A	3	1
37	Orientia tsutsugamushi str. Ikeda	BProt ARi	18983	1	2,008,987	69.5	N/A	2	N/A
38	Zymomonas mobilis subsp. mobilis ZM4	BProt AS	12354	1	2,056,416	53.7	1	3	1
39	Orientia tsutsugamushi str. Boryong	BProt ARi	16180	1	2,127,051	69.5	N/A	2	N/A
40	Zymomonas mobilis subsp. mobilis NCIMB 11163	BProt AS	34821	4	2,223,520	53.4	1	3	1
41	Bartonella grahamii as4aup	BProt ARh	34873	2	2,369,520	62.0	N/A	3	1
42	Bartonella tribocorum CIP 105476	BProt ARh	28109	2	2,642,404	61.2	N/A	N/A	1
43	Granulibacter bethesdensis CGDNIH1	BProt AR	17111	1	2,708,355	40.9	1	2	2
44	Candidatus Puniceispirillum marinum IMCC1322	BProt AS	28081	1	2,753,527	51.2	1	3	N/A
45	Gluconobacter oxydans 621H	BProt AR	13325	6	2,922,384	39.2	1	2	4
46	Erythrobacter litoralis HTCC2594	BProt AS	13480	1	3,052,398	36.9	1	2	6
47	Acetobacter pasteurianus IFO 3283-01-42C	BProt AR	31141	7	3,247,995	46.9	N/A	2	2
48	Brucella ovis ATCC 25840	BProt ARh	12514	2	3,275,590	42.8	1	3	2
49	Brucella melitensis biovar Abortus 2308	BProt ARh	16203	2	3,278,307	42.8	1	3	2
50	Brucella abortus S19	BProt ARh	18999	2	3,283,936	42.8	1	3	2
51	Brucella abortus bv. 1 str. 9-941	BProt ARh	9619	2	3,286,445	42.8	1	3	2
52	Brucella melitensis bv. 1 str. 16M	BProt ARh	180	2	3,294,931	42.8	1	3	1
53	Brucella melitensis ATCC 23457	BProt ARh	30561	2	3,311,219	42.8	1	3	2
54	Brucella canis ATCC 23365	BProt ARh	20243	2	3,312,769	42.8	1	3	2
55	Brucella suis 1330	BProt ARh	320	2	3,315,175	42.7	1	3	2
56	Brucella suis ATCC 23445	BProt ARh	20371	2	3,324,607	42.8	N/A	N/A	2
57	Acetobacter pasteurianus IFO 3283-12	BProt AR	32203	7	3,336,990	46.9	N/A	2	2
58	Acetobacter pasteurianus IFO 3283-32	BProt AR	31139	7	3,337,040	46.9	N/A	2	2
59	Brucella microti CCM 4915	BProt ARh	32233	2	3,337,369	42.7	1	3	2
60	Acetobacter pasteurianus IFO 3283-07	BProt AR	31133	7	3,338,426	46.9	N/A	2	2
61	Acetobacter pasteurianus IFO 3283-22	BProt AR	31135	7	3,339,649	46.9	N/A	2	2
62	Acetobacter pasteurianus IFO 3283-03	BProt AR	31131	7	3,339,669	46.9	N/A	2	2
63	Acetobacter pasteurianus IFO 3283-26	BProt AR	31137	7	3,339,683	46.9	N/A	2	2
64	Acetobacter pasteurianus IFO 3283-01	BProt AR	31129	7	3,340,249	46.9	N/A	2	2
65	Maricaulis maris MCS10	BProt AR	17333	1	3,368,780	37.3	1	3	7
66	Sphingopyxis alaskensis RB2256	BProt AS	13907	2	3,373,713	34.5	1	3	11
67	Nitrobacter winogradskyi Nb-255	BProt ARh	13474	1	3,402,093	38.0	1	2	13
68	Hirschia baltica ATCC 49814	BProt AR	33191	2	3,540,114	54.8	N/A	N/A	N/A
69	Hyphomicrobium denitrificans ATCC 51888	BProt ARh	33261	1	3,638,969	39.2	1	2	7
70	Hyphomonas neptunium ATCC 15444	BProt AR	15721	1	3,705,021	38.1	1	3	8
71	Oligotropha carboxidovorans OM5	BProt ARh	28805	1	3,745,629	37.6	1	3	8
72	Rhodobacter capsulatus SB 1003	BProt AR	55	2	3,871,920	33.4	1	3	3
73	Parvibaculum lavamentivorans DS-1	BProt ARh	17639	1	3,914,745	37.7	1	3	5
74	Gluconacetobacter diazotrophicus PAl 5	BProt AR	21071	2	3,914,947	33.7	2	2	3
75	Acidiphilium cryptum JF-5	BProt AR	15753	9	3,963,080	32.9	1	2	3
76	Gluconacetobacter diazotrophicus PAl 5	BProt AR	377	3	3,999,591	33.7	2	2	3
77	Caulobacter crescentus CB15	BProt AC	298	1	4,016,947	32.8	1	2	15
78	Caulobacter crescentus NA1000	BProt AC	32027	1	4,042,929	32.8	1	2	15
79	Ruegeria sp. TM1040	BProt AR	13040	3	4,153,699	39.9	N/A	3	6
80	Novosphingobium aromaticivorans DSM 12444	BProt AS	204	3	4,233,314	34.9	1	3	6
81	Methylocella silvestris BL2	BProt ARh	20635	1	4,305,430	36.9	1	2	8
82	Roseobacter denitrificans OCh 114	BProt AR	16426	5	4,331,234	41.1	N/A	3	6
83	Rhodospirillum centenum SW	BProt AR	18307	1	4,355,548	29.5	1	4	13
84	Phenylobacterium zucineum HLK1	BProt AC	19931	2	4,379,231	28.9	1	4	17
85	Jannaschia sp. CCS1	BProt AR	12733	2	4,404,049	37.8	N/A	3	6
86	Rhodospirillum rubrum ATCC 11170	BProt AR	58	2	4,406,557	34.6	1	3	7
87	Dinoroseobacter shibae DFL 12	BProt AR	17417	6	4,417,868	34.5	1	3	5
88	Beijerinckia indica subsp. indica ATCC 9039	BProt ARh	20841	3	4,418,616	43.0	1	2	5
89	Sphingobium japonicum UT26S	BProt AS	19949	5	4,424,862	35.1	1	3	9
90	Rhodobacter sphaeroides ATCC 17029	BProt AR	15754	3	4,489,380	31.0	4	4	10
91	Rhodobacter sphaeroides ATCC 17025	BProt AR	15755	6	4,557,127	31.8	3	4	5
92	Rhodobacter sphaeroides 2.4.1	BProt AR	56	7	4,603,060	31.2	4	4	8
93	Caulobacter segnis ATCC 21756	BProt AC	37277	1	4,655,622	32.3	1	2	25
94	Rhodobacter sphaeroides KD131	BProt AR	31111	4	4,711,139	30.9	4	4	10
95	Starkeya novella DSM 506	BProt ARh	37659	1	4,765,023	32.1	1	3	7
96	Rhodopseudomonas palustris BisB5	BProt ARh	15749	1	4,892,717	35.2	1	2	N/A
97	Chelativorans sp. BNC1	BProt ARh	10690	4	4,935,185	38.9	2	3	6
98	Magnetospirillum magneticum AMB-1	BProt AR	16217	1	4,967,148	34.9	1	3	4
99	Nitrobacter hamburgensis X14	BProt ARh	13473	4	5,011,522	38.4	1	2	8
100	Ochrobactrum anthropi ATCC 49188	BProt ARh	19485	6	5,205,777	43.9	1	3	9
101	Paracoccus denitrificans PD1222	BProt AR	13020	3	5,236,194	33.2	1	3	8
102	Rhodopseudomonas palustris HaA2	BProt ARh	15747	1	5,331,656	34.0	1	3	19
103	Rhodopseudomonas palustris CGA009	BProt ARh	57	2	5,467,640	35.0	1	2	16
104	Methylobacterium extorquens PA1	BProt ARh	18637	1	5,471,154	31.8	1	3	9
105	Rhodopseudomonas palustris BisA53	BProt ARh	15751	1	5,505,494	35.6	1	2	19
106	Rhodopseudomonas palustris BisB18	BProt ARh	15750	1	5,513,844	35.0	1	2	9
107	Xanthobacter autotrophicus Py2	BProt ARh	15756	2	5,625,098	32.7	1	2	14
108	Agrobacterium tumefaciens str. C58	BProt ARh	283	4	5,673,465	41.0	1	2	11
109	Rhodopseudomonas palustris TIE-1	BProt ARh	20167	1	5,744,041	35.1	1	3	15
110	Methylobacterium populi BJ001	BProt ARh	19559	3	5,848,997	30.6	1	3	11
111	Caulobacter sp. K31	BProt AC	16306	3	5,889,399	32.7	1	2	28
112	Sphingomonas wittichii RW1	BProt AS	17343	3	5,915,246	32.1	1	3	14
113	Methylobacterium chloromethanicum CM4	BProt ARh	19527	3	6,180,732	31.9	1	3	14
114	Agrobacterium vitis S4	BProt ARh	13372	7	6,320,946	42.5	1	3	9
115	Rhizobium etli CIAT 652	BProt ARh	28021	4	6,448,048	38.7	2	3	14
116	Rhizobium etli CFN 42	BProt ARh	13932	7	6,530,228	39.0	2	3	7
117	Sinorhizobium meliloti 1021	BProt ARh	19	3	6,691,694	37.8	1	3	11
118	Sinorhizobium medicae WSM419	BProt ARh	16304	4	6,817,576	38.8	1	3	10
119	Rhizobium leguminosarum bv. trifolii WSM2304	BProt ARh	20179	5	6,872,702	38.8	2	3	16
120	Methylobacterium extorquens AM1	BProt ARh	20	5	6,879,778	31.5	1	5	14
121	Rhizobium sp. NGR234	BProt ARh	21101	3	6,891,900	37.6	1	3	10
122	Methylobacterium radiotolerans JCM 2831	BProt ARh	18817	9	6,899,110	29.0	1	3	16
123	Agrobacterium radiobacter K84	BProt ARh	13402	5	7,273,300	40.1	1	3	4
124	Rhizobium leguminosarum bv. trifolii WSM1325	BProt ARh	20097	6	7,418,122	39.2	1	3	16
125	Bradyrhizobium sp. ORS278	BProt ARh	19575	1	7,456,587	34.5	1	2	15
126	Mesorhizobium loti MAFF303099	BProt ARh	18	3	7,596,297	37.5	2	3	N/A
127	Azospirillum sp. B510	BProt AR	32551	7	7,599,738	32.4	1	6	10
128	Methylobacterium sp. 4-46	BProt ARh	18809	3	7,737,025	28.5	1	3	N/A
129	Rhizobium leguminosarum bv. viciae 3841	BProt ARh	344	7	7,751,309	39.1	1	3	14
130	Bradyrhizobium sp. BTAi1	BProt ARh	16137	2	8,493,513	35.2	1	2	15
131	Methylobacterium nodulans ORS 2060	BProt ARh	20477	8	8,839,022	31.6	2	3	16
132	Bradyrhizobium japonicum USDA 110	BProt ARh	17	1	9,105,828	35.9	2	4	17

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini