Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Caulobacter sp. K31BProt AC1630635,889,39932.71228
2Caulobacter segnis ATCC 21756BProt AC3727714,655,62232.31225
3Rhodopseudomonas palustris HaA2BProt ARh1574715,331,65634.01319
4Rhodopseudomonas palustris BisA53BProt ARh1575115,505,49435.61219
5Bradyrhizobium japonicum USDA 110BProt ARh1719,105,82835.92417
6Phenylobacterium zucineum HLK1BProt AC1993124,379,23128.91417
7Rhodopseudomonas palustris CGA009BProt ARh5725,467,64035.01216
8Methylobacterium radiotolerans JCM 2831BProt ARh1881796,899,11029.01316
9Rhizobium leguminosarum bv. trifolii WSM1325BProt ARh2009767,418,12239.21316
10Rhizobium leguminosarum bv. trifolii WSM2304BProt ARh2017956,872,70238.82316
11Methylobacterium nodulans ORS 2060BProt ARh2047788,839,02231.62316
12Caulobacter crescentus CB15BProt AC29814,016,94732.81215
13Bradyrhizobium sp. BTAi1BProt ARh1613728,493,51335.21215
14Bradyrhizobium sp. ORS278BProt ARh1957517,456,58734.51215
15Rhodopseudomonas palustris TIE-1BProt ARh2016715,744,04135.11315
16Caulobacter crescentus NA1000BProt AC3202714,042,92932.81215
17Methylobacterium extorquens AM1BProt ARh2056,879,77831.51514
18Rhizobium leguminosarum bv. viciae 3841BProt ARh34477,751,30939.11314
19Xanthobacter autotrophicus Py2BProt ARh1575625,625,09832.71214
20Sphingomonas wittichii RW1BProt AS1734335,915,24632.11314
21Methylobacterium chloromethanicum CM4BProt ARh1952736,180,73231.91314
22Rhizobium etli CIAT 652BProt ARh2802146,448,04838.72314
23Nitrobacter winogradskyi Nb-255BProt ARh1347413,402,09338.01213
24Rhodospirillum centenum SWBProt AR1830714,355,54829.51413
25Sinorhizobium meliloti 1021BProt ARh1936,691,69437.81311
26Agrobacterium tumefaciens str. C58BProt ARh28345,673,46541.01211
27Sphingopyxis alaskensis RB2256BProt AS1390723,373,71334.51311
28Methylobacterium populi BJ001BProt ARh1955935,848,99730.61311
29Rhodobacter sphaeroides ATCC 17029BProt AR1575434,489,38031.04410
30Sinorhizobium medicae WSM419BProt ARh1630446,817,57638.81310
31Rhizobium sp. NGR234BProt ARh2110136,891,90037.61310
32Rhodobacter sphaeroides KD131BProt AR3111144,711,13930.94410
33Azospirillum sp. B510BProt AR3255177,599,73832.41610
34Agrobacterium vitis S4BProt ARh1337276,320,94642.5139
35Rhodopseudomonas palustris BisB18BProt ARh1575015,513,84435.0129
36Methylobacterium extorquens PA1BProt ARh1863715,471,15431.8139
37Ochrobactrum anthropi ATCC 49188BProt ARh1948565,205,77743.9139
38Sphingobium japonicum UT26SBProt AS1994954,424,86235.1139
39Rhodobacter sphaeroides 2.4.1BProt AR5674,603,06031.2448
40Paracoccus denitrificans PD1222BProt AR1302035,236,19433.2138
41Nitrobacter hamburgensis X14BProt ARh1347345,011,52238.4128
42Hyphomonas neptunium ATCC 15444BProt AR1572113,705,02138.1138
43Methylocella silvestris BL2BProt ARh2063514,305,43036.9128
44Oligotropha carboxidovorans OM5BProt ARh2880513,745,62937.6138
45Rhodospirillum rubrum ATCC 11170BProt AR5824,406,55734.6137
46Rhizobium etli CFN 42BProt ARh1393276,530,22839.0237
47Maricaulis maris MCS10BProt AR1733313,368,78037.3137
48Hyphomicrobium denitrificans ATCC 51888BProt ARh3326113,638,96939.2127
49Starkeya novella DSM 506BProt ARh3765914,765,02332.1137
50Novosphingobium aromaticivorans DSM 12444BProt AS20434,233,31434.9136
51Chelativorans sp. BNC1BProt ARh1069044,935,18538.9236
52Jannaschia sp. CCS1BProt AR1273324,404,04937.8N/A36
53Ruegeria sp. TM1040BProt AR1304034,153,69939.9N/A36
54Erythrobacter litoralis HTCC2594BProt AS1348013,052,39836.9126
55Roseobacter denitrificans OCh 114BProt AR1642654,331,23441.1N/A36
56Rhodobacter sphaeroides ATCC 17025BProt AR1575564,557,12731.8345
57Dinoroseobacter shibae DFL 12BProt AR1741764,417,86834.5135
58Parvibaculum lavamentivorans DS-1BProt ARh1763913,914,74537.7135
59Beijerinckia indica subsp. indica ATCC 9039BProt ARh2084134,418,61643.0125
60Gluconobacter oxydans 621HBProt AR1332562,922,38439.2124
61Agrobacterium radiobacter K84BProt ARh1340257,273,30040.1134
62Magnetospirillum magneticum AMB-1BProt AR1621714,967,14834.9134
63Rhodobacter capsulatus SB 1003BProt AR5523,871,92033.4133
64Gluconacetobacter diazotrophicus PAl 5BProt AR37733,999,59133.7223
65Acidiphilium cryptum JF-5BProt AR1575393,963,08032.9123
66Gluconacetobacter diazotrophicus PAl 5BProt AR2107123,914,94733.7223
67Brucella suis 1330BProt ARh32023,315,17542.7132
68Brucella abortus bv. 1 str. 9-941BProt ARh961923,286,44542.8132
69Brucella ovis ATCC 25840BProt ARh1251423,275,59042.8132
70Brucella melitensis biovar Abortus 2308BProt ARh1620323,278,30742.8132
71Granulibacter bethesdensis CGDNIH1BProt AR1711112,708,35540.9122
72Brucella abortus S19BProt ARh1899923,283,93642.8132
73Brucella canis ATCC 23365BProt ARh2024323,312,76942.8132
74Brucella suis ATCC 23445BProt ARh2037123,324,60742.8N/AN/A2
75Brucella melitensis ATCC 23457BProt ARh3056123,311,21942.8132
76Acetobacter pasteurianus IFO 3283-01BProt AR3112973,340,24946.9N/A22
77Acetobacter pasteurianus IFO 3283-03BProt AR3113173,339,66946.9N/A22
78Acetobacter pasteurianus IFO 3283-07BProt AR3113373,338,42646.9N/A22
79Acetobacter pasteurianus IFO 3283-22BProt AR3113573,339,64946.9N/A22
80Acetobacter pasteurianus IFO 3283-26BProt AR3113773,339,68346.9N/A22
81Acetobacter pasteurianus IFO 3283-32BProt AR3113973,337,04046.9N/A22
82Acetobacter pasteurianus IFO 3283-01-42CBProt AR3114173,247,99546.9N/A22
83Acetobacter pasteurianus IFO 3283-12BProt AR3220373,336,99046.9N/A22
84Brucella microti CCM 4915BProt ARh3223323,337,36942.7132
85Bartonella quintana str. ToulouseBProt ARh4411,581,38461.2N/A31
86Brucella melitensis bv. 1 str. 16MBProt ARh18023,294,93142.8131
87Bartonella henselae str. Houston-1BProt ARh19611,931,04761.8N/A31
88Zymomonas mobilis subsp. mobilis ZM4BProt AS1235412,056,41653.7131
89Bartonella tribocorum CIP 105476BProt ARh2810922,642,40461.2N/AN/A1
90Zymomonas mobilis subsp. mobilis NCIMB 11163BProt AS3482142,223,52053.4131
91Bartonella grahamii as4aupBProt ARh3487322,369,52062.0N/A31
92Mesorhizobium loti MAFF303099BProt ARh1837,596,29737.523N/A
93Anaplasma marginale str. St. MariesBProt ARi4011,197,68750.2N/A2N/A
94Rickettsia conorii str. Malish 7BProt ARi4211,268,75567.6N/A2N/A
95Rickettsia prowazekii str. Madrid EBProt ARi4311,111,52371.0N/A2N/A
96Wolbachia endosymbiont of Drosophila melanogasterBProt ARi27211,267,78264.8N/A2N/A
97Ehrlichia chaffeensis str. ArkansasBProt ARi32511,176,24869.9N/A2N/A
98Anaplasma phagocytophilum HZBProt ARi33611,471,28258.4N/A2N/A
99Neorickettsia sennetsu str. MiyayamaBProt ARi3571859,00658.9N/A2N/A
100Ehrlichia ruminantium str. WelgevondenBProt ARi961411,516,35572.5N/A2N/A
101Rickettsia rickettsii str. 'Sheila Smith'BProt ARi963611,257,71067.5N/A2N/A
102Rickettsia typhi str. WilmingtonBProt ARi1067911,111,49671.1N/A2N/A
103Ehrlichia canis str. JakeBProt ARi1069411,315,03071.0N/A2N/A
104Wolbachia endosymbiont strain TRS of Brugia malayiBProt ARi1247511,080,08465.8N/A2N/A
105Rickettsia canadensis str. McKielBProt ARi1295211,159,77268.9N/A2N/A
106Rickettsia akari str. HartfordBProt ARi1295311,231,06067.7N/A2N/A
107Ehrlichia ruminantium str. WelgevondenBProt ARi1335511,512,97772.5N/A2N/A
108Ehrlichia ruminantium str. GardelBProt ARi1335611,499,92072.5N/A2N/A
109Rickettsia felis URRWXCal2BProt ARi1388431,587,24067.5N/A2N/A
110Candidatus Pelagibacter ubique HTCC1062BProt ARi1398911,308,75970.3N/A2N/A
111Rickettsia bellii RML369-CBProt ARi1399611,522,07668.3N/A2N/A
112Rhodopseudomonas palustris BisB5BProt ARh1574914,892,71735.212N/A
113Methylobacterium extorquens DM4160933180,08335.0N/AN/AN/A
114Orientia tsutsugamushi str. BoryongBProt ARi1618012,127,05169.5N/A2N/A
115Bartonella bacilliformis KC583BProt ARh1624911,445,02161.8N/A3N/A
116Anaplasma marginale str. FloridaBProt ARi1636911,202,43550.2N/A2N/A
117Rickettsia bellii OSU 85-389BProt ARi1723711,528,98068.4N/A1N/A
118Rickettsia africae ESF-5BProt ARi1826921,290,91767.6N/A2N/A
119Rickettsia massiliae MTU5BProt ARi1827121,376,18467.5N/A2N/A
120Methylobacterium sp. 4-46BProt ARh1880937,737,02528.513N/A
121Orientia tsutsugamushi str. IkedaBProt ARi1898312,008,98769.5N/A2N/A
122Neorickettsia risticii str. IllinoisBProt ARi190991879,97758.7N/A2N/A
123Rickettsia prowazekii Rp22BProt ARi1981311,111,61271.0N/A2N/A
124Rickettsia rickettsii str. IowaBProt ARi1994311,268,17567.5N/A2N/A
125Candidatus Puniceispirillum marinum IMCC1322BProt AS2808112,753,52751.213N/A
126Candidatus Liberibacter asiaticus str. psy62BProt ARh2983511,226,70463.5N/A2N/A
127Wolbachia endosymbiont of Culex quinquefasciatus PelBProt ARi3031311,482,45565.8N/A2N/A
128Rickettsia peacockii str. RusticBProt ARi3130921,314,89867.4N/A2N/A
129Candidatus Hodgkinia cicadicola DsemBProt AC321351143,79541.6N/AN/AN/A
130Anaplasma centrale str. IsraelBProt ARi3276511,206,80650.0N/A2N/A
131Hirschia baltica ATCC 49814BProt AR3319123,540,11454.8N/AN/AN/A
132Wolbachia sp. wRiBProt ARi3327311,445,87364.8N/A2N/A

Acknowledgements:

This research is funded by:

Developed by: