Genome Atlas - 3.0 (beta)

132 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	HisKA Count	HisKA 1 Count	HisKA 2 Count	HisKA 3 Count	HWE HK Count	RRReceiver Count

1	Candidatus Hodgkinia cicadicola Dsem	BProt AC	32135	1	143,795	41.6	0	0	0	0	0	0
2	Methylobacterium extorquens DM4		16093	3	180,083	35.0	0	0	0	0	0	0
3	Neorickettsia sennetsu str. Miyayama	BProt ARi	357	1	859,006	58.9	2	2	0	0	0	3
4	Neorickettsia risticii str. Illinois	BProt ARi	19099	1	879,977	58.7	2	2	0	0	0	3
5	Wolbachia endosymbiont strain TRS of Brugia malayi	BProt ARi	12475	1	1,080,084	65.8	2	2	0	0	0	3
6	Rickettsia typhi str. Wilmington	BProt ARi	10679	1	1,111,496	71.1	4	4	0	0	0	4
7	Rickettsia prowazekii str. Madrid E	BProt ARi	43	1	1,111,523	71.0	4	4	0	0	0	4
8	Rickettsia prowazekii Rp22	BProt ARi	19813	1	1,111,612	71.0	4	4	0	0	0	4
9	Rickettsia canadensis str. McKiel	BProt ARi	12952	1	1,159,772	68.9	3	3	0	0	0	4
10	Ehrlichia chaffeensis str. Arkansas	BProt ARi	325	1	1,176,248	69.9	3	3	0	0	0	4
11	Anaplasma marginale str. St. Maries	BProt ARi	40	1	1,197,687	50.2	3	3	0	0	0	4
12	Anaplasma marginale str. Florida	BProt ARi	16369	1	1,202,435	50.2	3	3	0	0	0	4
13	Anaplasma centrale str. Israel	BProt ARi	32765	1	1,206,806	50.0	3	3	0	0	0	4
14	Candidatus Liberibacter asiaticus str. psy62	BProt ARh	29835	1	1,226,704	63.5	4	4	0	0	0	4
15	Rickettsia akari str. Hartford	BProt ARi	12953	1	1,231,060	67.7	3	3	0	0	0	4
16	Rickettsia rickettsii str. 'Sheila Smith'	BProt ARi	9636	1	1,257,710	67.5	4	4	0	0	0	3
17	Wolbachia endosymbiont of Drosophila melanogaster	BProt ARi	272	1	1,267,782	64.8	2	2	0	0	0	3
18	Rickettsia rickettsii str. Iowa	BProt ARi	19943	1	1,268,175	67.5	4	4	0	0	0	4
19	Rickettsia conorii str. Malish 7	BProt ARi	42	1	1,268,755	67.6	4	4	0	0	0	4
20	Rickettsia africae ESF-5	BProt ARi	18269	2	1,290,917	67.6	3	3	0	0	0	4
21	Candidatus Pelagibacter ubique HTCC1062	BProt ARi	13989	1	1,308,759	70.3	4	4	0	0	0	5
22	Rickettsia peacockii str. Rustic	BProt ARi	31309	2	1,314,898	67.4	3	3	0	0	0	4
23	Ehrlichia canis str. Jake	BProt ARi	10694	1	1,315,030	71.0	2	2	0	0	0	4
24	Rickettsia massiliae MTU5	BProt ARi	18271	2	1,376,184	67.5	3	3	0	0	0	4
25	Bartonella bacilliformis KC583	BProt ARh	16249	1	1,445,021	61.8	9	7	1	0	1	11
26	Wolbachia sp. wRi	BProt ARi	33273	1	1,445,873	64.8	2	2	0	0	0	3
27	Anaplasma phagocytophilum HZ	BProt ARi	336	1	1,471,282	58.4	3	3	0	0	0	4
28	Wolbachia endosymbiont of Culex quinquefasciatus Pel	BProt ARi	30313	1	1,482,455	65.8	2	2	0	0	0	3
29	Ehrlichia ruminantium str. Gardel	BProt ARi	13356	1	1,499,920	72.5	3	3	0	0	0	5
30	Ehrlichia ruminantium str. Welgevonden	BProt ARi	13355	1	1,512,977	72.5	3	3	0	0	0	5
31	Ehrlichia ruminantium str. Welgevonden	BProt ARi	9614	1	1,516,355	72.5	3	3	0	0	0	4
32	Rickettsia bellii RML369-C	BProt ARi	13996	1	1,522,076	68.3	4	4	0	0	0	4
33	Rickettsia bellii OSU 85-389	BProt ARi	17237	1	1,528,980	68.4	4	4	0	0	0	4
34	Bartonella quintana str. Toulouse	BProt ARh	44	1	1,581,384	61.2	10	8	1	0	1	10
35	Rickettsia felis URRWXCal2	BProt ARi	13884	3	1,587,240	67.5	4	4	0	0	0	4
36	Bartonella henselae str. Houston-1	BProt ARh	196	1	1,931,047	61.8	10	8	1	0	1	10
37	Orientia tsutsugamushi str. Ikeda	BProt ARi	18983	1	2,008,987	69.5	3	3	0	0	0	9
38	Zymomonas mobilis subsp. mobilis ZM4	BProt AS	12354	1	2,056,416	53.7	9	7	2	0	0	14
39	Orientia tsutsugamushi str. Boryong	BProt ARi	16180	1	2,127,051	69.5	3	3	0	0	0	6
40	Zymomonas mobilis subsp. mobilis NCIMB 11163	BProt AS	34821	4	2,223,520	53.4	9	7	2	0	0	14
41	Bartonella grahamii as4aup	BProt ARh	34873	2	2,369,520	62.0	10	8	1	0	1	10
42	Bartonella tribocorum CIP 105476	BProt ARh	28109	2	2,642,404	61.2	0	0	0	0	0	0
43	Granulibacter bethesdensis CGDNIH1	BProt AR	17111	1	2,708,355	40.9	15	12	1	1	1	20
44	Candidatus Puniceispirillum marinum IMCC1322	BProt AS	28081	1	2,753,527	51.2	6	6	0	0	0	10
45	Gluconobacter oxydans 621H	BProt AR	13325	6	2,922,384	39.2	15	10	2	1	2	21
46	Erythrobacter litoralis HTCC2594	BProt AS	13480	1	3,052,398	36.9	14	10	2	0	2	20
47	Acetobacter pasteurianus IFO 3283-01-42C	BProt AR	31141	7	3,247,995	46.9	16	15	1	0	0	19
48	Brucella ovis ATCC 25840	BProt ARh	12514	2	3,275,590	42.8	17	13	1	1	2	19
49	Brucella melitensis biovar Abortus 2308	BProt ARh	16203	2	3,278,307	42.8	18	14	1	1	2	19
50	Brucella abortus S19	BProt ARh	18999	2	3,283,936	42.8	19	15	1	1	2	20
51	Brucella abortus bv. 1 str. 9-941	BProt ARh	9619	2	3,286,445	42.8	19	15	1	1	2	20
52	Brucella melitensis bv. 1 str. 16M	BProt ARh	180	2	3,294,931	42.8	19	15	1	1	2	20
53	Brucella melitensis ATCC 23457	BProt ARh	30561	2	3,311,219	42.8	19	15	1	1	2	20
54	Brucella canis ATCC 23365	BProt ARh	20243	2	3,312,769	42.8	18	15	1	0	2	18
55	Brucella suis 1330	BProt ARh	320	2	3,315,175	42.7	18	15	1	0	2	19
56	Brucella suis ATCC 23445	BProt ARh	20371	2	3,324,607	42.8	0	N/A	N/A	N/A	N/A	0
57	Acetobacter pasteurianus IFO 3283-12	BProt AR	32203	7	3,336,990	46.9	16	15	1	0	0	19
58	Acetobacter pasteurianus IFO 3283-32	BProt AR	31139	7	3,337,040	46.9	16	15	1	0	0	19
59	Brucella microti CCM 4915	BProt ARh	32233	2	3,337,369	42.7	17	14	1	0	2	20
60	Acetobacter pasteurianus IFO 3283-07	BProt AR	31133	7	3,338,426	46.9	16	15	1	0	0	19
61	Acetobacter pasteurianus IFO 3283-22	BProt AR	31135	7	3,339,649	46.9	15	14	1	0	0	19
62	Acetobacter pasteurianus IFO 3283-03	BProt AR	31131	7	3,339,669	46.9	15	14	1	0	0	19
63	Acetobacter pasteurianus IFO 3283-26	BProt AR	31137	7	3,339,683	46.9	15	14	1	0	0	19
64	Acetobacter pasteurianus IFO 3283-01	BProt AR	31129	7	3,340,249	46.9	16	15	1	0	0	19
65	Maricaulis maris MCS10	BProt AR	17333	1	3,368,780	37.3	34	33	0	1	0	46
66	Sphingopyxis alaskensis RB2256	BProt AS	13907	2	3,373,713	34.5	13	11	0	0	2	23
67	Nitrobacter winogradskyi Nb-255	BProt ARh	13474	1	3,402,093	38.0	22	19	1	0	2	32
68	Hirschia baltica ATCC 49814	BProt AR	33191	2	3,540,114	54.8	0	0	0	0	0	1
69	Hyphomicrobium denitrificans ATCC 51888	BProt ARh	33261	1	3,638,969	39.2	36	25	1	4	6	48
70	Hyphomonas neptunium ATCC 15444	BProt AR	15721	1	3,705,021	38.1	22	18	1	1	2	29
71	Oligotropha carboxidovorans OM5	BProt ARh	28805	1	3,745,629	37.6	27	22	1	2	2	39
72	Rhodobacter capsulatus SB 1003	BProt AR	55	2	3,871,920	33.4	26	23	2	1	0	43
73	Parvibaculum lavamentivorans DS-1	BProt ARh	17639	1	3,914,745	37.7	37	34	2	0	1	42
74	Gluconacetobacter diazotrophicus PAl 5	BProt AR	21071	2	3,914,947	33.7	14	12	1	1	0	28
75	Acidiphilium cryptum JF-5	BProt AR	15753	9	3,963,080	32.9	13	13	0	0	0	20
76	Gluconacetobacter diazotrophicus PAl 5	BProt AR	377	3	3,999,591	33.7	15	13	1	1	0	29
77	Caulobacter crescentus CB15	BProt AC	298	1	4,016,947	32.8	54	41	3	1	9	63
78	Caulobacter crescentus NA1000	BProt AC	32027	1	4,042,929	32.8	54	41	3	1	9	63
79	Ruegeria sp. TM1040	BProt AR	13040	3	4,153,699	39.9	36	34	1	1	0	39
80	Novosphingobium aromaticivorans DSM 12444	BProt AS	204	3	4,233,314	34.9	26	21	0	1	4	33
81	Methylocella silvestris BL2	BProt ARh	20635	1	4,305,430	36.9	35	26	3	4	2	45
82	Roseobacter denitrificans OCh 114	BProt AR	16426	5	4,331,234	41.1	20	17	2	1	0	31
83	Rhodospirillum centenum SW	BProt AR	18307	1	4,355,548	29.5	48	39	4	0	5	55
84	Phenylobacterium zucineum HLK1	BProt AC	19931	2	4,379,231	28.9	47	39	2	0	6	65
85	Jannaschia sp. CCS1	BProt AR	12733	2	4,404,049	37.8	16	14	1	0	1	22
86	Rhodospirillum rubrum ATCC 11170	BProt AR	58	2	4,406,557	34.6	38	32	4	0	2	57
87	Dinoroseobacter shibae DFL 12	BProt AR	17417	6	4,417,868	34.5	27	25	1	1	0	35
88	Beijerinckia indica subsp. indica ATCC 9039	BProt ARh	20841	3	4,418,616	43.0	32	27	0	1	4	39
89	Sphingobium japonicum UT26S	BProt AS	19949	5	4,424,862	35.1	28	24	2	0	2	43
90	Rhodobacter sphaeroides ATCC 17029	BProt AR	15754	3	4,489,380	31.0	33	26	5	0	2	51
91	Rhodobacter sphaeroides ATCC 17025	BProt AR	15755	6	4,557,127	31.8	32	23	6	0	3	49
92	Rhodobacter sphaeroides 2.4.1	BProt AR	56	7	4,603,060	31.2	36	27	6	0	3	53
93	Caulobacter segnis ATCC 21756	BProt AC	37277	1	4,655,622	32.3	68	48	5	2	13	72
94	Rhodobacter sphaeroides KD131	BProt AR	31111	4	4,711,139	30.9	36	26	5	1	4	52
95	Starkeya novella DSM 506	BProt ARh	37659	1	4,765,023	32.1	35	31	1	2	1	50
96	Rhodopseudomonas palustris BisB5	BProt ARh	15749	1	4,892,717	35.2	46	37	3	2	4	62
97	Chelativorans sp. BNC1	BProt ARh	10690	4	4,935,185	38.9	26	21	0	0	5	32
98	Magnetospirillum magneticum AMB-1	BProt AR	16217	1	4,967,148	34.9	85	83	1	1	0	111
99	Nitrobacter hamburgensis X14	BProt ARh	13473	4	5,011,522	38.4	35	26	3	0	6	41
100	Ochrobactrum anthropi ATCC 49188	BProt ARh	19485	6	5,205,777	43.9	26	20	1	1	4	29
101	Paracoccus denitrificans PD1222	BProt AR	13020	3	5,236,194	33.2	29	25	1	2	1	39
102	Rhodopseudomonas palustris HaA2	BProt ARh	15747	1	5,331,656	34.0	50	40	5	3	2	71
103	Rhodopseudomonas palustris CGA009	BProt ARh	57	2	5,467,640	35.0	53	39	4	2	8	69
104	Methylobacterium extorquens PA1	BProt ARh	18637	1	5,471,154	31.8	69	45	8	3	13	83
105	Rhodopseudomonas palustris BisA53	BProt ARh	15751	1	5,505,494	35.6	47	41	2	2	2	76
106	Rhodopseudomonas palustris BisB18	BProt ARh	15750	1	5,513,844	35.0	52	43	6	1	2	78
107	Xanthobacter autotrophicus Py2	BProt ARh	15756	2	5,625,098	32.7	43	40	3	0	0	52
108	Agrobacterium tumefaciens str. C58	BProt ARh	283	4	5,673,465	41.0	42	32	2	1	7	55
109	Rhodopseudomonas palustris TIE-1	BProt ARh	20167	1	5,744,041	35.1	52	39	3	2	8	69
110	Methylobacterium populi BJ001	BProt ARh	19559	3	5,848,997	30.6	93	64	9	4	16	103
111	Caulobacter sp. K31	BProt AC	16306	3	5,889,399	32.7	70	53	5	2	10	82
112	Sphingomonas wittichii RW1	BProt AS	17343	3	5,915,246	32.1	35	31	2	0	2	58
113	Methylobacterium chloromethanicum CM4	BProt ARh	19527	3	6,180,732	31.9	78	54	8	4	12	95
114	Agrobacterium vitis S4	BProt ARh	13372	7	6,320,946	42.5	48	34	5	1	8	58
115	Rhizobium etli CIAT 652	BProt ARh	28021	4	6,448,048	38.7	43	36	2	0	5	57
116	Rhizobium etli CFN 42	BProt ARh	13932	7	6,530,228	39.0	47	39	3	1	4	62
117	Sinorhizobium meliloti 1021	BProt ARh	19	3	6,691,694	37.8	38	28	0	2	8	53
118	Sinorhizobium medicae WSM419	BProt ARh	16304	4	6,817,576	38.8	40	29	2	1	8	55
119	Rhizobium leguminosarum bv. trifolii WSM2304	BProt ARh	20179	5	6,872,702	38.8	52	42	2	1	7	63
120	Methylobacterium extorquens AM1	BProt ARh	20	5	6,879,778	31.5	74	51	7	5	11	94
121	Rhizobium sp. NGR234	BProt ARh	21101	3	6,891,900	37.6	37	30	1	1	5	54
122	Methylobacterium radiotolerans JCM 2831	BProt ARh	18817	9	6,899,110	29.0	88	63	5	3	17	116
123	Agrobacterium radiobacter K84	BProt ARh	13402	5	7,273,300	40.1	37	33	0	2	2	59
124	Rhizobium leguminosarum bv. trifolii WSM1325	BProt ARh	20097	6	7,418,122	39.2	64	48	7	1	8	84
125	Bradyrhizobium sp. ORS278	BProt ARh	19575	1	7,456,587	34.5	67	52	2	1	12	87
126	Mesorhizobium loti MAFF303099	BProt ARh	18	3	7,596,297	37.5	51	36	5	0	10	59
127	Azospirillum sp. B510	BProt AR	32551	7	7,599,738	32.4	101	89	8	1	3	142
128	Methylobacterium sp. 4-46	BProt ARh	18809	3	7,737,025	28.5	92	70	7	2	13	115
129	Rhizobium leguminosarum bv. viciae 3841	BProt ARh	344	7	7,751,309	39.1	54	45	3	1	5	71
130	Bradyrhizobium sp. BTAi1	BProt ARh	16137	2	8,493,513	35.2	75	52	4	5	14	97
131	Methylobacterium nodulans ORS 2060	BProt ARh	20477	8	8,839,022	31.6	70	54	8	2	6	93
132	Bradyrhizobium japonicum USDA 110	BProt ARh	17	1	9,105,828	35.9	80	64	4	5	7	115

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini