Genome Atlas - 3.0 (beta)

132 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	Number of genes	5S rRNA count	16S rRNA count	23S rRNA count	tRNA count	% AT

1	Bradyrhizobium japonicum USDA 110	BProt ARh	17	1	9,105,828	8,317	1	1	1	51	35.9
2	Methylobacterium nodulans ORS 2060	BProt ARh	20477	8	8,839,022	8,309	7	7	7	73	31.6
3	Bradyrhizobium sp. BTAi1	BProt ARh	16137	2	8,493,513	7,622	2	2	2	52	35.2
4	Rhizobium leguminosarum bv. viciae 3841	BProt ARh	344	7	7,751,309	7,285	3	3	3	52	39.1
5	Mesorhizobium loti MAFF303099	BProt ARh	18	3	7,596,297	7,281	2	2	2	54	37.5
6	Rhizobium leguminosarum bv. trifolii WSM1325	BProt ARh	20097	6	7,418,122	7,001	3	3	3	51	39.2
7	Bradyrhizobium sp. ORS278	BProt ARh	19575	1	7,456,587	6,752	2	2	2	50	34.5
8	Methylobacterium sp. 4-46	BProt ARh	18809	3	7,737,025	6,692	6	6	6	63	28.5
9	Agrobacterium radiobacter K84	BProt ARh	13402	5	7,273,300	6,684	3	3	3	52	40.1
10	Methylobacterium radiotolerans JCM 2831	BProt ARh	18817	9	6,899,110	6,431	6	6	6	60	29.0
11	Rhizobium leguminosarum bv. trifolii WSM2304	BProt ARh	20179	5	6,872,702	6,415	3	3	3	53	38.8
12	Rhizobium sp. NGR234	BProt ARh	21101	3	6,891,900	6,366	3	3	3	54	37.6
13	Azospirillum sp. B510	BProt AR	32551	7	7,599,738	6,309	8	9	9	80	32.4
14	Methylobacterium extorquens AM1	BProt ARh	20	5	6,879,778	6,234	5	5	5	63	31.5
15	Sinorhizobium medicae WSM419	BProt ARh	16304	4	6,817,576	6,213	3	3	3	53	38.8
16	Sinorhizobium meliloti 1021	BProt ARh	19	3	6,691,694	6,205	3	3	3	55	37.8
17	Rhizobium etli CIAT 652	BProt ARh	28021	4	6,448,048	6,109	3	3	3	51	38.7
18	Rhizobium etli CFN 42	BProt ARh	13932	7	6,530,228	6,016	3	3	3	50	39.0
19	Methylobacterium extorquens DM4		16093	3	180,083	5,947	0	0	0	0	35.0
20	Methylobacterium chloromethanicum CM4	BProt ARh	19527	3	6,180,732	5,516	5	5	5	61	31.9
21	Caulobacter sp. K31	BProt AC	16306	3	5,889,399	5,438	2	2	2	49	32.7
22	Agrobacterium vitis S4	BProt ARh	13372	7	6,320,946	5,389	4	4	4	54	42.5
23	Methylobacterium populi BJ001	BProt ARh	19559	3	5,848,997	5,365	5	5	5	58	30.6
24	Sphingomonas wittichii RW1	BProt AS	17343	3	5,915,246	5,345	2	2	2	48	32.1
25	Agrobacterium tumefaciens str. C58	BProt ARh	283	4	5,673,465	5,301	4	4	4	53	41.0
26	Rhodopseudomonas palustris TIE-1	BProt ARh	20167	1	5,744,041	5,246	2	2	2	52	35.1
27	Paracoccus denitrificans PD1222	BProt AR	13020	3	5,236,194	5,077	3	3	3	53	33.2
28	Xanthobacter autotrophicus Py2	BProt ARh	15756	2	5,625,098	5,035	2	2	2	51	32.7
29	Rhodopseudomonas palustris BisB18	BProt ARh	15750	1	5,513,844	4,886	2	2	2	50	35.0
30	Rhodopseudomonas palustris BisA53	BProt ARh	15751	1	5,505,494	4,878	2	2	2	48	35.6
31	Rhodopseudomonas palustris CGA009	BProt ARh	57	2	5,467,640	4,840	2	2	2	49	35.0
32	Methylobacterium extorquens PA1	BProt ARh	18637	1	5,471,154	4,829	5	5	5	58	31.8
33	Ochrobactrum anthropi ATCC 49188	BProt ARh	19485	6	5,205,777	4,799	4	4	4	58	43.9
34	Rhodopseudomonas palustris HaA2	BProt ARh	15747	1	5,331,656	4,683	1	1	1	50	34.0
35	Rhodobacter sphaeroides KD131	BProt AR	31111	4	4,711,139	4,569	4	4	4	54	30.9
36	Magnetospirillum magneticum AMB-1	BProt AR	16217	1	4,967,148	4,559	2	2	2	50	34.9
37	Chelativorans sp. BNC1	BProt ARh	10690	4	4,935,185	4,543	2	2	2	52	38.9
38	Starkeya novella DSM 506	BProt ARh	37659	1	4,765,023	4,431	1	1	1	46	32.1
39	Rhodopseudomonas palustris BisB5	BProt ARh	15749	1	4,892,717	4,397	2	2	2	51	35.2
40	Sphingobium japonicum UT26S	BProt AS	19949	5	4,424,862	4,394	3	3	3	56	35.1
41	Rhodobacter sphaeroides ATCC 17025	BProt AR	15755	6	4,557,127	4,333	4	4	4	54	31.8
42	Nitrobacter hamburgensis X14	BProt ARh	13473	4	5,011,522	4,326	1	1	1	55	38.4
43	Jannaschia sp. CCS1	BProt AR	12733	2	4,404,049	4,283	1	1	1	42	37.8
44	Rhodobacter sphaeroides 2.4.1	BProt AR	56	7	4,603,060	4,242	3	3	3	53	31.2
45	Dinoroseobacter shibae DFL 12	BProt AR	17417	6	4,417,868	4,187	2	2	2	44	34.5
46	Roseobacter denitrificans OCh 114	BProt AR	16426	5	4,331,234	4,144	1	1	1	38	41.1
47	Caulobacter segnis ATCC 21756	BProt AC	37277	1	4,655,622	4,139	2	2	2	52	32.3
48	Rhodobacter sphaeroides ATCC 17029	BProt AR	15754	3	4,489,380	4,132	4	4	4	55	31.0
49	Rhodospirillum centenum SW	BProt AR	18307	1	4,355,548	4,041	4	4	4	52	29.5
50	Gluconacetobacter diazotrophicus PAl 5	BProt AR	377	3	3,999,591	3,938	4	4	4	55	33.7
51	Novosphingobium aromaticivorans DSM 12444	BProt AS	204	3	4,233,314	3,937	3	3	3	57	34.9
52	Caulobacter crescentus NA1000	BProt AC	32027	1	4,042,929	3,877	2	2	2	51	32.8
53	Ruegeria sp. TM1040	BProt AR	13040	3	4,153,699	3,864	5	5	5	62	39.9
54	Phenylobacterium zucineum HLK1	BProt AC	19931	2	4,379,231	3,854	1	1	1	42	28.9
55	Rhodospirillum rubrum ATCC 11170	BProt AR	58	2	4,406,557	3,841	4	4	4	55	34.6
56	Methylocella silvestris BL2	BProt ARh	20635	1	4,305,430	3,818	2	2	2	49	36.9
57	Beijerinckia indica subsp. indica ATCC 9039	BProt ARh	20841	3	4,418,616	3,784	3	3	3	52	43.0
58	Caulobacter crescentus CB15	BProt AC	298	1	4,016,947	3,737	2	2	2	51	32.8
59	Oligotropha carboxidovorans OM5	BProt ARh	28805	1	3,745,629	3,722	1	1	1	49	37.6
60	Rhodobacter capsulatus SB 1003	BProt AR	55	2	3,871,920	3,642	4	4	4	52	33.4
61	Parvibaculum lavamentivorans DS-1	BProt ARh	17639	1	3,914,745	3,636	1	1	1	45	37.7
62	Acidiphilium cryptum JF-5	BProt AR	15753	9	3,963,080	3,559	2	2	2	48	32.9
63	Hyphomicrobium denitrificans ATCC 51888	BProt ARh	33261	1	3,638,969	3,512	1	1	1	46	39.2
64	Hyphomonas neptunium ATCC 15444	BProt AR	15721	1	3,705,021	3,505	1	1	1	43	38.1
65	Gluconacetobacter diazotrophicus PAl 5	BProt AR	21071	2	3,914,947	3,501	4	4	4	55	33.7
66	Brucella melitensis biovar Abortus 2308	BProt ARh	16203	2	3,278,307	3,350	3	3	3	55	42.8
67	Brucella microti CCM 4915	BProt ARh	32233	2	3,337,369	3,287	3	3	3	55	42.7
68	Brucella suis 1330	BProt ARh	320	2	3,315,175	3,273	3	3	3	55	42.7
69	Brucella canis ATCC 23365	BProt ARh	20243	2	3,312,769	3,251	3	3	3	55	42.8
70	Brucella suis ATCC 23445	BProt ARh	20371	2	3,324,607	3,241	3	3	3	54	42.8
71	Brucella melitensis bv. 1 str. 16M	BProt ARh	180	2	3,294,931	3,198	3	3	3	54	42.8
72	Sphingopyxis alaskensis RB2256	BProt AS	13907	2	3,373,713	3,195	1	1	1	45	34.5
73	Hirschia baltica ATCC 49814	BProt AR	33191	2	3,540,114	3,187	0	0	0	0	54.8
74	Brucella melitensis ATCC 23457	BProt ARh	30561	2	3,311,219	3,136	3	3	3	55	42.8
75	Nitrobacter winogradskyi Nb-255	BProt ARh	13474	1	3,402,093	3,122	1	1	1	49	38.0
76	Brucella abortus bv. 1 str. 9-941	BProt ARh	9619	2	3,286,445	3,085	3	3	3	55	42.8
77	Maricaulis maris MCS10	BProt AR	17333	1	3,368,780	3,063	2	2	2	45	37.3
78	Acetobacter pasteurianus IFO 3283-01	BProt AR	31129	7	3,340,249	3,050	5	5	5	57	46.9
79	Acetobacter pasteurianus IFO 3283-03	BProt AR	31131	7	3,339,669	3,048	5	5	5	57	46.9
80	Acetobacter pasteurianus IFO 3283-22	BProt AR	31135	7	3,339,649	3,048	5	5	5	57	46.9
81	Acetobacter pasteurianus IFO 3283-26	BProt AR	31137	7	3,339,683	3,048	5	5	5	57	46.9
82	Acetobacter pasteurianus IFO 3283-07	BProt AR	31133	7	3,338,426	3,047	5	5	5	57	46.9
83	Acetobacter pasteurianus IFO 3283-32	BProt AR	31139	7	3,337,040	3,046	5	5	5	57	46.9
84	Acetobacter pasteurianus IFO 3283-12	BProt AR	32203	7	3,336,990	3,046	5	5	5	57	46.9
85	Erythrobacter litoralis HTCC2594	BProt AS	13480	1	3,052,398	3,011	1	1	1	43	36.9
86	Brucella abortus S19	BProt ARh	18999	2	3,283,936	3,000	3	3	3	55	42.8
87	Acetobacter pasteurianus IFO 3283-01-42C	BProt AR	31141	7	3,247,995	2,984	4	4	4	54	46.9
88	Brucella ovis ATCC 25840	BProt ARh	12514	2	3,275,590	2,892	3	3	3	53	42.8
89	Gluconobacter oxydans 621H	BProt AR	13325	6	2,922,384	2,664	4	4	4	55	39.2
90	Candidatus Puniceispirillum marinum IMCC1322	BProt AS	28081	1	2,753,527	2,546	1	1	1	36	51.2
91	Granulibacter bethesdensis CGDNIH1	BProt AR	17111	1	2,708,355	2,437	3	3	3	52	40.9
92	Orientia tsutsugamushi str. Boryong	BProt ARi	16180	1	2,127,051	2,179	1	1	1	34	69.5
93	Bartonella tribocorum CIP 105476	BProt ARh	28109	2	2,642,404	2,154	2	2	2	42	61.2
94	Zymomonas mobilis subsp. mobilis ZM4	BProt AS	12354	1	2,056,416	1,998	3	3	3	51	53.7
95	Orientia tsutsugamushi str. Ikeda	BProt ARi	18983	1	2,008,987	1,967	1	1	1	34	69.5
96	Zymomonas mobilis subsp. mobilis NCIMB 11163	BProt AS	34821	4	2,223,520	1,884	3	3	3	51	53.4
97	Bartonella grahamii as4aup	BProt ARh	34873	2	2,369,520	1,768	2	2	2	42	62.0
98	Bartonella henselae str. Houston-1	BProt ARh	196	1	1,931,047	1,612	3	2	2	43	61.8
99	Rickettsia felis URRWXCal2	BProt ARi	13884	3	1,587,240	1,512	1	1	1	33	67.5
100	Rickettsia bellii OSU 85-389	BProt ARi	17237	1	1,528,980	1,476	1	1	1	34	68.4
101	Rickettsia bellii RML369-C	BProt ARi	13996	1	1,522,076	1,429	1	1	1	34	68.3
102	Wolbachia endosymbiont of Culex quinquefasciatus Pel	BProt ARi	30313	1	1,482,455	1,385	1	1	1	34	65.8
103	Rickettsia rickettsii str. Iowa	BProt ARi	19943	1	1,268,175	1,384	1	1	1	34	67.5
104	Rickettsia conorii str. Malish 7	BProt ARi	42	1	1,268,755	1,374	1	1	1	33	67.6
105	Candidatus Pelagibacter ubique HTCC1062	BProt ARi	13989	1	1,308,759	1,354	1	1	1	32	70.3
106	Rickettsia rickettsii str. 'Sheila Smith'	BProt ARi	9636	1	1,257,710	1,345	1	1	1	34	67.5
107	Bartonella quintana str. Toulouse	BProt ARh	44	1	1,581,384	1,308	2	2	2	42	61.2
108	Bartonella bacilliformis KC583	BProt ARh	16249	1	1,445,021	1,283	2	2	2	44	61.8
109	Anaplasma phagocytophilum HZ	BProt ARi	336	1	1,471,282	1,264	1	1	1	37	58.4
110	Rickettsia akari str. Hartford	BProt ARi	12953	1	1,231,060	1,259	1	1	1	33	67.7
111	Wolbachia endosymbiont of Drosophila melanogaster	BProt ARi	272	1	1,267,782	1,195	1	1	1	34	64.8
112	Wolbachia sp. wRi	BProt ARi	33273	1	1,445,873	1,150	1	1	1	35	64.8
113	Candidatus Liberibacter asiaticus str. psy62	BProt ARh	29835	1	1,226,704	1,109	3	3	3	44	63.5
114	Ehrlichia chaffeensis str. Arkansas	BProt ARi	325	1	1,176,248	1,105	1	1	1	37	69.9
115	Rickettsia canadensis str. McKiel	BProt ARi	12952	1	1,159,772	1,093	1	1	1	33	68.9
116	Rickettsia africae ESF-5	BProt ARi	18269	2	1,290,917	1,041	1	1	1	33	67.6
117	Rickettsia massiliae MTU5	BProt ARi	18271	2	1,376,184	980	1	1	1	33	67.5
118	Ehrlichia ruminantium str. Welgevonden	BProt ARi	13355	1	1,512,977	958	1	1	1	36	72.5
119	Rickettsia prowazekii Rp22	BProt ARi	19813	1	1,111,612	952	1	1	1	33	71.0
120	Ehrlichia ruminantium str. Gardel	BProt ARi	13356	1	1,499,920	950	1	1	1	36	72.5
121	Anaplasma marginale str. St. Maries	BProt ARi	40	1	1,197,687	949	1	1	1	37	50.2
122	Rickettsia peacockii str. Rustic	BProt ARi	31309	2	1,314,898	947	1	1	1	34	67.4
123	Anaplasma marginale str. Florida	BProt ARi	16369	1	1,202,435	942	1	1	1	37	50.2
124	Neorickettsia sennetsu str. Miyayama	BProt ARi	357	1	859,006	932	1	1	1	33	58.9
125	Ehrlichia canis str. Jake	BProt ARi	10694	1	1,315,030	925	1	1	1	36	71.0
126	Anaplasma centrale str. Israel	BProt ARi	32765	1	1,206,806	925	1	1	1	37	50.0
127	Ehrlichia ruminantium str. Welgevonden	BProt ARi	9614	1	1,516,355	920	1	1	1	36	72.5
128	Neorickettsia risticii str. Illinois	BProt ARi	19099	1	879,977	898	1	1	1	33	58.7
129	Rickettsia typhi str. Wilmington	BProt ARi	10679	1	1,111,496	838	1	1	1	33	71.1
130	Rickettsia prowazekii str. Madrid E	BProt ARi	43	1	1,111,523	834	1	1	1	33	71.0
131	Wolbachia endosymbiont strain TRS of Brugia malayi	BProt ARi	12475	1	1,080,084	805	1	1	1	34	65.8
132	Candidatus Hodgkinia cicadicola Dsem	BProt AC	32135	1	143,795	169	1	1	1	15	41.6

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini