Genome Atlas - 3.0 (beta)

76 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	Number of genes	5S rRNA count	16S rRNA count	23S rRNA count	tRNA count	% AT

1	Chromobacterium violaceum ATCC 12472	BProt BN	444	1	4,751,080	4,407	9	8	8	98	35.2
2	Delftia acidovorans SPH-1	BProt BB	17413	1	6,767,514	6,040	5	5	5	80	33.5
3	Comamonas testosteroni CNB-1	BProt BB	29203	2	5,464,824	4,895	3	3	3	79	38.5
4	Laribacter hongkongensis HLHK9	BProt BN	30817	1	3,169,329	3,238	7	7	7	78	37.7
5	Burkholderia cenocepacia J2315	BProt BB	339	4	8,055,782	6,485	6	6	6	73	33.1
6	Burkholderia sp. CCGE1002	BProt BB	37719	4	7,884,858	6,889	7	7	7	73	36.7
7	Methylibium petroleiphilum PM1	BProt BB	10789	2	4,643,639	4,449	1	1	1	69	31.2
8	Burkholderia ambifaria AMMD	BProt BB	13490	4	7,528,567	6,617	6	6	6	69	33.2
9	Burkholderia ambifaria MC40-6	BProt BB	17411	4	7,642,536	6,697	6	6	6	68	33.6
10	Burkholderia sp. 383	BProt BB	10695	3	8,676,277	7,717	6	6	6	67	33.7
11	Burkholderia vietnamiensis G4	BProt BB	10696	8	8,391,070	7,617	6	6	6	67	34.3
12	Burkholderia cenocepacia HI2424	BProt BB	13918	4	7,702,840	6,919	6	6	6	67	33.2
13	Burkholderia cenocepacia AU 1054	BProt BB	13919	3	7,279,116	6,477	6	6	6	67	33.1
14	Burkholderia cenocepacia MC0-3	BProt BB	17929	3	7,971,389	7,008	6	6	6	67	33.4
15	Ralstonia eutropha JMP134	BProt BB	10646	4	7,255,290	6,446	6	6	6	66	35.6
16	Burkholderia glumae BGR1	BProt BB	33901	6	7,284,683	5,773	5	5	5	66	32.1
17	Burkholderia multivorans ATCC 17616	BProt BB	17407	4	7,008,622	6,259	5	5	5	65	33.3
18	Burkholderia multivorans ATCC 17616	BProt BB	19401	4	7,008,810	6,230	5	5	5	65	33.3
19	Burkholderia xenovorans LB400	BProt BB	254	3	9,731,138	8,702	6	6	6	64	37.4
20	Dechloromonas aromatica RCB	BProt BR	9635	1	4,501,104	4,171	4	4	4	64	40.7
21	Cupriavidus taiwanensis	BProt BB	15733	3	6,476,522	1,611	5	5	5	63	33.0
22	Burkholderia phytofirmans PsJN	BProt BB	17463	3	8,214,658	7,241	6	6	6	63	37.7
23	Cupriavidus metallidurans CH34	BProt BB	250	4	6,913,352	6,319	4	4	4	62	36.5
24	Burkholderia phymatum STM815	BProt BB	17409	4	8,676,562	7,496	6	6	6	62	37.7
25	Bordetella avium 197N	BProt BB	27	1	3,732,255	3,423	3	3	3	61	38.4
26	Ralstonia eutropha H16	BProt BB	13603	3	7,416,678	6,626	5	5	5	61	33.7
27	Variovorax paradoxus S110	BProt BB	30453	2	6,754,997	6,279	2	2	2	61	32.5
28	Burkholderia pseudomallei K96243	BProt BB	178	2	7,247,547	5,855	4	4	4	60	31.9
29	Burkholderia pseudomallei 1710b	BProt BB	13954	2	7,308,054	6,347	4	4	4	60	32.0
30	Neisseria meningitidis MC58	BProt BN	251	1	2,272,360	2,063	4	4	4	59	48.5
31	Neisseria meningitidis FAM18	BProt BN	255	1	2,194,961	1,975	4	4	4	59	48.4
32	Burkholderia pseudomallei 668	BProt BB	13953	2	7,040,403	7,230	4	4	4	59	31.7
33	Burkholderia pseudomallei 1106a	BProt BB	16182	2	7,089,249	7,183	4	4	4	59	31.7
34	Neisseria meningitidis 053442	BProt BN	16393	1	2,153,416	2,020	4	4	4	59	48.3
35	Neisseria meningitidis 8013	BProt BN	34687	1	2,277,550	2,126	4	4	4	59	48.6
36	Neisseria meningitidis Z2491	BProt BN	252	1	2,184,406	1,993	4	4	4	58	48.2
37	Burkholderia thailandensis E264	BProt BB	10774	2	6,723,972	5,634	4	4	4	58	32.4
38	Aromatoleum aromaticum EbN1	BProt BR	13242	3	4,727,255	4,598	4	4	4	58	35.3
39	Ralstonia solanacearum GMI1000	BProt BB	13	2	5,810,922	5,120	4	4	4	57	33.0
40	Burkholderia mallei ATCC 23344	BProt BB	171	2	5,835,527	5,025	3	4	3	56	31.5
41	Burkholderia mallei NCTC 10229	BProt BB	13943	2	5,742,303	5,510	3	4	3	56	31.5
42	Neisseria gonorrhoeae FA 1090	BProt BN	23	1	2,153,922	2,002	4	4	4	55	47.3
43	Bordetella bronchiseptica RB50	BProt BB	24	1	5,339,179	5,006	3	3	3	55	31.9
44	Azoarcus sp. BH72	BProt BR	13217	1	4,376,040	3,989	4	4	4	55	32.1
45	Burkholderia mallei NCTC 10247	BProt BB	13946	2	5,848,380	5,852	3	4	3	55	31.5
46	Burkholderia mallei SAVP1	BProt BB	13947	2	5,232,401	5,189	2	5	2	55	31.6
47	Ralstonia pickettii 12J	BProt BB	17631	3	5,325,729	4,952	3	3	3	55	36.4
48	Neisseria gonorrhoeae NCCP11945	BProt BN	29335	2	2,236,178	2,674	4	4	4	55	47.6
49	Ralstonia pickettii 12D	BProt BB	18937	5	5,685,358	5,361	3	3	3	54	36.7
50	Bordetella parapertussis 12822	BProt BB	25	1	4,773,551	4,402	3	3	3	53	31.9
51	Acidovorax citrulli AAC00-1	BProt BB	15708	1	5,352,772	4,709	3	3	3	53	31.5
52	Acidovorax ebreus TPSY	BProt BB	29975	1	3,796,573	3,479	3	3	3	53	33.2
53	Bordetella pertussis Tohama I	BProt BB	26	1	4,086,189	3,806	3	3	3	51	32.3
54	Polaromonas naphthalenivorans CJ2	BProt BB	13418	9	5,366,143	4,929	2	2	2	51	38.3
55	Acidovorax sp. JS42	BProt BB	15685	3	4,585,154	4,155	3	3	3	51	33.9
56	Bordetella petrii DSM 12804	BProt BB	28135	1	5,287,950	5,035	3	3	3	51	34.5
57	Leptothrix cholodnii SP-6	BProt BB	20039	1	4,909,403	4,363	2	2	2	50	31.1
58	Methylovorus sp. SIP3-4	BProt BM	33241	3	3,082,007	2,910	2	2	2	48	45.4
59	Verminephrobacter eiseniae EF01-2	BProt BB	17187	2	5,597,943	4,947	3	3	3	47	34.8
60	Methylotenera sp. 301	BProt BM	39983	1	3,059,871	2,764	3	3	3	47	57.4
61	Methylobacillus flagellatus KT	BProt BM	10647	1	2,971,517	2,753	2	2	2	46	44.3
62	Janthinobacterium sp. Marseille	BProt BB	16549	1	4,110,251	3,697	2	2	2	46	45.8
63	Methylotenera mobilis JLW8	BProt BM	33319	1	2,547,570	2,338	2	2	2	46	54.5
64	Herminiimonas arsenicoxydans	BProt BB	13467	1	3,424,307	3,333	2	2	2	45	45.7
65	Rhodoferax ferrireducens T118	BProt BB	13908	2	4,969,784	4,418	2	2	2	45	40.4
66	Thiomonas intermedia K12	BProt BB	33641	3	3,462,095	3,172	1	1	1	45	36.2
67	Polaromonas sp. JS666	BProt BB	13121	3	5,898,676	5,453	1	1	1	44	38.0
68	Thiobacillus denitrificans ATCC 25259	BProt BH	13025	1	2,909,809	2,827	2	2	2	43	33.9
69	Nitrosospira multiformis ATCC 25196	BProt BN	13912	4	3,234,309	2,805	1	1	1	43	46.1
70	Nitrosomonas europaea ATCC 19718	BProt BN	52	1	2,812,094	2,574	1	1	1	41	49.3
71	Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1	BProt BB	16679	1	2,159,490	2,077	1	1	1	38	55.2
72	Polynucleobacter necessarius subsp. necessarius STIR1	BProt BB	19991	1	1,560,469	1,508	1	1	1	37	54.4
73	Thauera sp. MZ1T	BProt BR	20091	2	2,699,905	2,343	2	2	2	29	31.9
74	Candidatus Accumulibacter phosphatis clade IIA str. UW-1		29435	4	247,615	236	0	0	0	0	38.9
75	Neisseria meningitidis alpha14	BProt BN	39689	1	2,145,295	1,924	N/A	N/A	N/A	N/A	48.1
76	Herbaspirillum seropedicae SmR1		47945	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini