Genome Atlas - 3.0 (beta)

76 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	Number of genes	Coding density	Bp/gene	Estimated # proteins	True proteins ratio

1	Burkholderia xenovorans LB400	BProt BB	254	3	9,731,138	37.4	8,702	0.9	1,118	7,199	N/A
2	Burkholderia phymatum STM815	BProt BB	17409	4	8,676,562	37.7	7,496	0.8	1,159	N/A	N/A
3	Burkholderia sp. 383	BProt BB	10695	3	8,676,277	33.7	7,717	0.9	1,125	6,596	N/A
4	Burkholderia vietnamiensis G4	BProt BB	10696	8	8,391,070	34.3	7,617	0.9	1,106	6,101	N/A
5	Burkholderia phytofirmans PsJN	BProt BB	17463	3	8,214,658	37.7	7,241	0.9	1,138	N/A	N/A
6	Burkholderia cenocepacia J2315	BProt BB	339	4	8,055,782	33.1	6,485	0.8	96,240	N/A	N/A
7	Burkholderia cenocepacia MC0-3	BProt BB	17929	3	7,971,389	33.4	7,008	0.9	1,138	N/A	N/A
8	Burkholderia sp. CCGE1002	BProt BB	37719	4	7,884,858	36.7	6,889	0.8	1,145	N/A	N/A
9	Burkholderia cenocepacia HI2424	BProt BB	13918	4	7,702,840	33.2	6,919	0.9	1,114	5,892	N/A
10	Burkholderia ambifaria MC40-6	BProt BB	17411	4	7,642,536	33.6	6,697	0.9	1,142	N/A	N/A
11	Burkholderia ambifaria AMMD	BProt BB	13490	4	7,528,567	33.2	6,617	0.9	1,141	5,629	N/A
12	Ralstonia eutropha H16	BProt BB	13603	3	7,416,678	33.7	6,626	0.9	1,120	5,353	N/A
13	Burkholderia pseudomallei 1710b	BProt BB	13954	2	7,308,054	32.0	6,347	0.9	1,154	5,581	N/A
14	Burkholderia glumae BGR1	BProt BB	33901	6	7,284,683	32.1	5,773	0.8	1,268	N/A	N/A
15	Burkholderia cenocepacia AU 1054	BProt BB	13919	3	7,279,116	33.1	6,477	0.9	1,124	5,506	N/A
16	Ralstonia eutropha JMP134	BProt BB	10646	4	7,255,290	35.6	6,446	0.9	1,127	5,548	N/A
17	Burkholderia pseudomallei K96243	BProt BB	178	2	7,247,547	31.9	5,855	0.8	1,242	4,940	N/A
18	Burkholderia pseudomallei 1106a	BProt BB	16182	2	7,089,249	31.7	7,183	0.9	987	4,823	N/A
19	Burkholderia pseudomallei 668	BProt BB	13953	2	7,040,403	31.7	7,230	0.9	974	4,875	N/A
20	Burkholderia multivorans ATCC 17616	BProt BB	19401	4	7,008,810	33.3	6,230	0.9	1,126	N/A	N/A
21	Burkholderia multivorans ATCC 17616	BProt BB	17407	4	7,008,622	33.3	6,259	0.9	1,120	N/A	N/A
22	Cupriavidus metallidurans CH34	BProt BB	250	4	6,913,352	36.5	6,319	0.9	1,095	5,342	N/A
23	Delftia acidovorans SPH-1	BProt BB	17413	1	6,767,514	33.5	6,040	0.9	1,120	N/A	N/A
24	Variovorax paradoxus S110	BProt BB	30453	2	6,754,997	32.5	6,279	0.9	1,076	N/A	N/A
25	Burkholderia thailandensis E264	BProt BB	10774	2	6,723,972	32.4	5,634	0.9	1,195	4,819	N/A
26	Cupriavidus taiwanensis	BProt BB	15733	3	6,476,522	33.0	1,611	0.2	5,391	N/A	N/A
27	Polaromonas sp. JS666	BProt BB	13121	3	5,898,676	38.0	5,453	0.9	1,082	4,546	N/A
28	Burkholderia mallei NCTC 10247	BProt BB	13946	2	5,848,380	31.5	5,852	0.9	999	4,341	N/A
29	Burkholderia mallei ATCC 23344	BProt BB	171	2	5,835,527	31.5	5,025	0.8	1,161	4,124	N/A
30	Ralstonia solanacearum GMI1000	BProt BB	13	2	5,810,922	33.0	5,120	0.9	1,140	4,222	N/A
31	Burkholderia mallei NCTC 10229	BProt BB	13943	2	5,742,303	31.5	5,510	0.9	1,042	4,284	N/A
32	Ralstonia pickettii 12D	BProt BB	18937	5	5,685,358	36.7	5,361	0.9	1,064	N/A	N/A
33	Verminephrobacter eiseniae EF01-2	BProt BB	17187	2	5,597,943	34.8	4,947	0.9	1,132	4,284	N/A
34	Comamonas testosteroni CNB-1	BProt BB	29203	2	5,464,824	38.5	4,895	0.9	1,117	N/A	N/A
35	Polaromonas naphthalenivorans CJ2	BProt BB	13418	9	5,366,143	38.3	4,929	0.9	1,089	4,096	N/A
36	Acidovorax citrulli AAC00-1	BProt BB	15708	1	5,352,772	31.5	4,709	0.9	1,137	3,972	N/A
37	Bordetella bronchiseptica RB50	BProt BB	24	1	5,339,179	31.9	5,006	0.9	1,067	4,398	N/A
38	Ralstonia pickettii 12J	BProt BB	17631	3	5,325,729	36.4	4,952	0.9	1,077	N/A	N/A
39	Bordetella petrii DSM 12804	BProt BB	28135	1	5,287,950	34.5	5,035	0.9	1,050	N/A	N/A
40	Burkholderia mallei SAVP1	BProt BB	13947	2	5,232,401	31.6	5,189	0.9	1,008	3,886	N/A
41	Rhodoferax ferrireducens T118	BProt BB	13908	2	4,969,784	40.4	4,418	0.9	1,125	3,883	N/A
42	Leptothrix cholodnii SP-6	BProt BB	20039	1	4,909,403	31.1	4,363	0.9	1,125	N/A	N/A
43	Bordetella parapertussis 12822	BProt BB	25	1	4,773,551	31.9	4,402	0.9	1,084	3,782	N/A
44	Chromobacterium violaceum ATCC 12472	BProt BN	444	1	4,751,080	35.2	4,407	0.9	1,078	3,670	N/A
45	Aromatoleum aromaticum EbN1	BProt BR	13242	3	4,727,255	35.3	4,598	0.9	1,033	3,649	N/A
46	Methylibium petroleiphilum PM1	BProt BB	10789	2	4,643,639	31.2	4,449	0.9	1,045	3,709	N/A
47	Acidovorax sp. JS42	BProt BB	15685	3	4,585,154	33.9	4,155	0.9	1,105	3,549	N/A
48	Dechloromonas aromatica RCB	BProt BR	9635	1	4,501,104	40.7	4,171	0.9	1,079	3,613	N/A
49	Azoarcus sp. BH72	BProt BR	13217	1	4,376,040	32.1	3,989	0.9	1,097	3,521	N/A
50	Janthinobacterium sp. Marseille	BProt BB	16549	1	4,110,251	45.8	3,697	0.9	1,112	3,251	N/A
51	Bordetella pertussis Tohama I	BProt BB	26	1	4,086,189	32.3	3,806	0.9	1,074	3,143	N/A
52	Acidovorax ebreus TPSY	BProt BB	29975	1	3,796,573	33.2	3,479	0.9	1,091	N/A	N/A
53	Bordetella avium 197N	BProt BB	27	1	3,732,255	38.4	3,423	0.9	1,090	N/A	N/A
54	Thiomonas intermedia K12	BProt BB	33641	3	3,462,095	36.2	3,172	0.9	1,092	N/A	N/A
55	Herminiimonas arsenicoxydans	BProt BB	13467	1	3,424,307	45.7	3,333	0.9	1,027	2,702	N/A
56	Nitrosospira multiformis ATCC 25196	BProt BN	13912	4	3,234,309	46.1	2,805	0.9	1,153	2,462	N/A
57	Laribacter hongkongensis HLHK9	BProt BN	30817	1	3,169,329	37.7	3,238	0.9	979	N/A	N/A
58	Methylovorus sp. SIP3-4	BProt BM	33241	3	3,082,007	45.4	2,910	0.9	1,060	N/A	N/A
59	Methylotenera sp. 301	BProt BM	39983	1	3,059,871	57.4	2,764	0.9	1,107	N/A	N/A
60	Methylobacillus flagellatus KT	BProt BM	10647	1	2,971,517	44.3	2,753	0.9	1,079	2,403	N/A
61	Thiobacillus denitrificans ATCC 25259	BProt BH	13025	1	2,909,809	33.9	2,827	0.9	1,029	2,414	N/A
62	Nitrosomonas europaea ATCC 19718	BProt BN	52	1	2,812,094	49.3	2,574	0.9	1,093	2,181	N/A
63	Thauera sp. MZ1T	BProt BR	20091	2	2,699,905	31.9	2,343	0.9	1,153	N/A	N/A
64	Methylotenera mobilis JLW8	BProt BM	33319	1	2,547,570	54.5	2,338	0.9	1,090	N/A	N/A
65	Neisseria meningitidis 8013	BProt BN	34687	1	2,277,550	48.6	2,126	0.8	1,071	N/A	N/A
66	Neisseria meningitidis MC58	BProt BN	251	1	2,272,360	48.5	2,063	0.8	1,102	1,617	N/A
67	Neisseria gonorrhoeae NCCP11945	BProt BN	29335	2	2,236,178	47.6	2,674	0.9	838	N/A	N/A
68	Neisseria meningitidis FAM18	BProt BN	255	1	2,194,961	48.4	1,975	0.8	1,111	1,608	N/A
69	Neisseria meningitidis Z2491	BProt BN	252	1	2,184,406	48.2	1,993	0.8	1,096	1,585	N/A
70	Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1	BProt BB	16679	1	2,159,490	55.2	2,077	0.9	1,040	1,844	N/A
71	Neisseria gonorrhoeae FA 1090	BProt BN	23	1	2,153,922	47.3	2,002	0.8	1,076	1,527	N/A
72	Neisseria meningitidis 053442	BProt BN	16393	1	2,153,416	48.3	2,020	0.8	1,066	N/A	N/A
73	Neisseria meningitidis alpha14	BProt BN	39689	1	2,145,295	48.1	1,924	0.8	1,115	N/A	N/A
74	Polynucleobacter necessarius subsp. necessarius STIR1	BProt BB	19991	1	1,560,469	54.4	1,508	0.8	1,035	N/A	N/A
75	Candidatus Accumulibacter phosphatis clade IIA str. UW-1		29435	4	247,615	38.9	236	0.8	1,051	N/A	N/A
76	Herbaspirillum seropedicae SmR1		47945	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini