Genome Atlas - 3.0 (beta)

76 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	% Global Direct Repeats	% Global Inverted Repeats	% Local Direct Repeats	% Local Inverted Repeats	% Local Mirror Repeats	% Local Everted Repeats	% Simple Repeats

1	Polaromonas naphthalenivorans CJ2	BProt BB	13418	9	5,366,143	38.3	3.32	2.46	8.47	5.68	4.31	3.83	0.56
2	Burkholderia vietnamiensis G4	BProt BB	10696	8	8,391,070	34.3	3.62	3.30	14.14	10.53	9.77	8.38	0.99
3	Burkholderia glumae BGR1	BProt BB	33901	6	7,284,683	32.1	4.55	4.06	16.76	12.30	11.76	10.46	0.03
4	Ralstonia pickettii 12D	BProt BB	18937	5	5,685,358	36.7	2.56	1.08	7.62	5.09	4.55	3.76	0.16
5	Cupriavidus metallidurans CH34	BProt BB	250	4	6,913,352	36.5	2.97	2.88	7.45	4.98	4.39	3.73	0.64
6	Burkholderia cenocepacia J2315	BProt BB	339	4	8,055,782	33.1	3.28	3.60	15.50	10.97	10.33	8.56	1.03
7	Ralstonia eutropha JMP134	BProt BB	10646	4	7,255,290	35.6	2.43	1.72	8.36	5.63	5.14	4.57	0.63
8	Burkholderia ambifaria AMMD	BProt BB	13490	4	7,528,567	33.2	2.61	1.27	14.98	10.59	10.02	8.44	1.03
9	Nitrosospira multiformis ATCC 25196	BProt BN	13912	4	3,234,309	46.1	3.84	3.05	3.23	2.52	1.91	1.49	0.30
10	Burkholderia cenocepacia HI2424	BProt BB	13918	4	7,702,840	33.2	2.66	1.56	15.09	10.77	10.05	8.25	0.98
11	Burkholderia multivorans ATCC 17616	BProt BB	17407	4	7,008,622	33.3	3.20	2.47	16.27	12.05	11.11	9.51	1.11
12	Burkholderia phymatum STM815	BProt BB	17409	4	8,676,562	37.7	2.44	1.74	7.85	5.68	5.24	4.30	0.56
13	Burkholderia ambifaria MC40-6	BProt BB	17411	4	7,642,536	33.6	2.65	1.38	14.43	10.18	9.59	8.06	0.95
14	Burkholderia multivorans ATCC 17616	BProt BB	19401	4	7,008,810	33.3	3.20	2.47	16.27	12.05	11.11	9.51	1.11
15	Candidatus Accumulibacter phosphatis clade IIA str. UW-1		29435	4	247,615	38.9	5.80	0.53	5.43	4.21	3.61	3.02	0.14
16	Burkholderia sp. CCGE1002	BProt BB	37719	4	7,884,858	36.7	2.57	1.78	9.32	6.82	6.17	5.16	0.73
17	Burkholderia xenovorans LB400	BProt BB	254	3	9,731,138	37.4	3.48	2.46	7.97	5.63	5.18	4.21	0.60
18	Burkholderia sp. 383	BProt BB	10695	3	8,676,277	33.7	2.37	1.43	13.42	9.42	8.91	7.42	0.89
19	Polaromonas sp. JS666	BProt BB	13121	3	5,898,676	38.0	2.98	2.35	7.09	4.91	3.79	3.26	0.65
20	Aromatoleum aromaticum EbN1	BProt BR	13242	3	4,727,255	35.3	6.73	6.24	9.73	6.95	6.15	5.38	0.67
21	Ralstonia eutropha H16	BProt BB	13603	3	7,416,678	33.7	2.61	1.50	11.49	7.64	6.54	6.04	0.84
22	Burkholderia cenocepacia AU 1054	BProt BB	13919	3	7,279,116	33.1	2.58	1.96	15.28	10.88	10.16	8.41	0.99
23	Acidovorax sp. JS42	BProt BB	15685	3	4,585,154	33.9	8.47	6.23	11.43	7.34	5.96	5.27	0.80
24	Cupriavidus taiwanensis	BProt BB	15733	3	6,476,522	33.0	4.26	3.38	13.11	8.96	7.94	7.13	0.99
25	Burkholderia phytofirmans PsJN	BProt BB	17463	3	8,214,658	37.7	2.07	2.23	7.87	5.49	5.09	4.10	0.61
26	Ralstonia pickettii 12J	BProt BB	17631	3	5,325,729	36.4	2.86	3.40	7.90	5.30	4.72	3.94	0.59
27	Burkholderia cenocepacia MC0-3	BProt BB	17929	3	7,971,389	33.4	3.22	1.88	14.85	10.45	9.78	8.13	0.97
28	Methylovorus sp. SIP3-4	BProt BM	33241	3	3,082,007	45.4	1.85	0.54	4.93	3.20	2.11	1.72	0.39
29	Thiomonas intermedia K12	BProt BB	33641	3	3,462,095	36.2	3.73	2.82	8.65	5.58	4.58	3.69	0.70
30	Ralstonia solanacearum GMI1000	BProt BB	13	2	5,810,922	33.0	5.43	2.88	12.93	8.00	7.81	6.49	0.86
31	Burkholderia mallei ATCC 23344	BProt BB	171	2	5,835,527	31.5	6.18	4.70	21.50	16.26	15.50	13.36	1.76
32	Burkholderia pseudomallei K96243	BProt BB	178	2	7,247,547	31.9	3.19	2.44	21.00	15.87	15.08	12.85	1.69
33	Burkholderia thailandensis E264	BProt BB	10774	2	6,723,972	32.4	3.04	2.71	19.01	14.75	13.48	11.59	1.34
34	Methylibium petroleiphilum PM1	BProt BB	10789	2	4,643,639	31.2	4.18	2.60	14.13	9.53	8.76	8.25	1.02
35	Rhodoferax ferrireducens T118	BProt BB	13908	2	4,969,784	40.4	2.49	1.80	5.76	3.87	2.95	2.55	0.48
36	Burkholderia mallei NCTC 10229	BProt BB	13943	2	5,742,303	31.5	5.48	5.18	21.42	16.22	15.46	13.38	1.72
37	Burkholderia mallei NCTC 10247	BProt BB	13946	2	5,848,380	31.5	6.44	4.72	21.46	16.22	15.52	13.38	1.72
38	Burkholderia mallei SAVP1	BProt BB	13947	2	5,232,401	31.6	5.83	5.77	21.23	16.10	15.26	13.23	1.73
39	Burkholderia pseudomallei 668	BProt BB	13953	2	7,040,403	31.7	2.79	2.36	21.39	16.19	15.36	13.07	1.74
40	Burkholderia pseudomallei 1710b	BProt BB	13954	2	7,308,054	32.0	3.28	2.78	20.84	15.71	14.92	12.74	1.69
41	Burkholderia pseudomallei 1106a	BProt BB	16182	2	7,089,249	31.7	3.41	2.69	21.30	16.07	15.28	12.99	1.73
42	Verminephrobacter eiseniae EF01-2	BProt BB	17187	2	5,597,943	34.8	9.25	6.47	10.98	7.49	5.29	4.79	0.90
43	Thauera sp. MZ1T	BProt BR	20091	2	2,699,905	31.9	3.78	3.47	14.73	10.16	8.79	7.51	1.08
44	Comamonas testosteroni CNB-1	BProt BB	29203	2	5,464,824	38.5	3.38	2.74	7.45	5.01	3.05	2.53	0.51
45	Neisseria gonorrhoeae NCCP11945	BProt BN	29335	2	2,236,178	47.6	8.18	7.39	7.00	5.29	4.00	2.70	0.60
46	Variovorax paradoxus S110	BProt BB	30453	2	6,754,997	32.5	3.05	2.07	13.10	8.73	7.75	7.05	0.87
47	Neisseria gonorrhoeae FA 1090	BProt BN	23	1	2,153,922	47.3	8.50	6.30	7.10	5.30	4.00	2.70	0.60
48	Bordetella bronchiseptica RB50	BProt BB	24	1	5,339,179	31.9	2.90	4.00	15.00	10.50	8.70	7.90	1.10
49	Bordetella parapertussis 12822	BProt BB	25	1	4,773,551	31.9	3.60	3.00	15.00	10.40	8.60	7.90	1.10
50	Bordetella pertussis Tohama I	BProt BB	26	1	4,086,189	32.3	8.50	8.20	14.50	9.90	8.10	7.30	1.00
51	Bordetella avium 197N	BProt BB	27	1	3,732,255	38.4	2.70	0.60	6.10	4.40	3.40	2.60	0.50
52	Nitrosomonas europaea ATCC 19718	BProt BN	52	1	2,812,094	49.3	6.60	4.50	3.50	2.80	1.60	1.40	0.20
53	Neisseria meningitidis MC58	BProt BN	251	1	2,272,360	48.5	13.40	10.40	7.60	5.60	3.80	2.60	0.60
54	Neisseria meningitidis Z2491	BProt BN	252	1	2,184,406	48.2	9.80	9.20	7.50	5.60	3.80	2.70	0.60
55	Neisseria meningitidis FAM18	BProt BN	255	1	2,194,961	48.4	11.10	9.80	7.40	5.70	3.80	2.60	0.60
56	Chromobacterium violaceum ATCC 12472	BProt BN	444	1	4,751,080	35.2	4.00	2.70	13.30	7.90	6.90	6.10	1.00
57	Dechloromonas aromatica RCB	BProt BR	9635	1	4,501,104	40.7	4.70	1.60	5.70	3.70	3.10	2.40	0.40
58	Methylobacillus flagellatus KT	BProt BM	10647	1	2,971,517	44.3	10.10	0.60	4.50	3.20	2.10	1.60	0.30
59	Thiobacillus denitrificans ATCC 25259	BProt BH	13025	1	2,909,809	33.9	1.10	0.90	11.60	8.30	7.50	6.40	0.90
60	Azoarcus sp. BH72	BProt BR	13217	1	4,376,040	32.1	2.70	2.20	13.60	9.00	8.70	7.60	0.90
61	Herminiimonas arsenicoxydans	BProt BB	13467	1	3,424,307	45.7	2.20	1.30	4.50	3.40	2.30	1.80	0.40
62	Acidovorax citrulli AAC00-1	BProt BB	15708	1	5,352,772	31.5	6.60	4.60	13.60	8.90	8.30	7.20	1.00
63	Neisseria meningitidis 053442	BProt BN	16393	1	2,153,416	48.3	11.00	9.30	7.70	5.60	3.80	2.70	0.50
64	Janthinobacterium sp. Marseille	BProt BB	16549	1	4,110,251	45.8	2.90	0.80	4.40	3.00	2.30	1.90	0.30
65	Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1	BProt BB	16679	1	2,159,490	55.2	1.40	0.20	3.60	2.60	2.10	1.60	0.20
66	Delftia acidovorans SPH-1	BProt BB	17413	1	6,767,514	33.5	5.50	3.30	13.00	8.20	5.60	4.70	1.00
67	Polynucleobacter necessarius subsp. necessarius STIR1	BProt BB	19991	1	1,560,469	54.4	0.20	0.00	3.40	2.40	2.00	1.50	0.30
68	Leptothrix cholodnii SP-6	BProt BB	20039	1	4,909,403	31.1	3.70	2.70	16.20	10.60	9.30	8.50	1.20
69	Bordetella petrii DSM 12804	BProt BB	28135	1	5,287,950	34.5	6.80	6.00	11.30	7.90	6.20	5.60	0.80
70	Acidovorax ebreus TPSY	BProt BB	29975	1	3,796,573	33.2	2.30	2.90	12.10	7.70	6.40	5.70	0.90
71	Laribacter hongkongensis HLHK9	BProt BN	30817	1	3,169,329	37.7	4.10	5.30	9.40	5.50	4.80	3.70	0.00
72	Methylotenera mobilis JLW8	BProt BM	33319	1	2,547,570	54.5	1.30	0.30	4.10	2.90	2.30	1.70	0.00
73	Neisseria meningitidis 8013	BProt BN	34687	1	2,277,550	48.6	12.10	10.10	7.70	5.70	4.00	2.70	0.60
74	Neisseria meningitidis alpha14	BProt BN	39689	1	2,145,295	48.1	N/A	N/A	N/A	5.70	3.90	N/A	0.00
75	Methylotenera sp. 301	BProt BM	39983	1	3,059,871	57.4	2.20	1.20	4.10	3.20	2.60	2.10	0.30
76	Herbaspirillum seropedicae SmR1		47945	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini