Genome Atlas - 3.0 (beta)

76 projects found

Available Tables

Row	Organism	Tax Group	NCBI Project ID	Replicons	Total Size (bp)	% AT	HisKA Count	HisKA 1 Count	HisKA 2 Count	HisKA 3 Count	HWE HK Count	RRReceiver Count

1	Candidatus Accumulibacter phosphatis clade IIA str. UW-1		29435	4	247,615	38.9	1	1	0	0	0	1
2	Herbaspirillum seropedicae SmR1		47945	1	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
3	Ralstonia solanacearum GMI1000	BProt BB	13	2	5,810,922	33.0	36	31	0	5	0	58
4	Bordetella bronchiseptica RB50	BProt BB	24	1	5,339,179	31.9	18	17	0	1	0	31
5	Bordetella parapertussis 12822	BProt BB	25	1	4,773,551	31.9	16	15	0	1	0	28
6	Bordetella pertussis Tohama I	BProt BB	26	1	4,086,189	32.3	13	13	0	0	0	21
7	Bordetella avium 197N	BProt BB	27	1	3,732,255	38.4	17	17	0	0	0	31
8	Burkholderia mallei ATCC 23344	BProt BB	171	2	5,835,527	31.5	26	23	0	3	0	52
9	Burkholderia pseudomallei K96243	BProt BB	178	2	7,247,547	31.9	35	30	0	5	0	62
10	Cupriavidus metallidurans CH34	BProt BB	250	4	6,913,352	36.5	56	51	0	5	0	92
11	Burkholderia xenovorans LB400	BProt BB	254	3	9,731,138	37.4	57	51	0	6	0	93
12	Burkholderia cenocepacia J2315	BProt BB	339	4	8,055,782	33.1	38	33	0	5	0	61
13	Ralstonia eutropha JMP134	BProt BB	10646	4	7,255,290	35.6	49	43	0	6	0	77
14	Burkholderia sp. 383	BProt BB	10695	3	8,676,277	33.7	50	45	0	5	0	74
15	Burkholderia vietnamiensis G4	BProt BB	10696	8	8,391,070	34.3	50	45	1	4	0	79
16	Burkholderia thailandensis E264	BProt BB	10774	2	6,723,972	32.4	34	29	0	5	0	60
17	Methylibium petroleiphilum PM1	BProt BB	10789	2	4,643,639	31.2	44	35	0	9	0	61
18	Polaromonas sp. JS666	BProt BB	13121	3	5,898,676	38.0	48	41	1	6	0	65
19	Polaromonas naphthalenivorans CJ2	BProt BB	13418	9	5,366,143	38.3	54	48	0	6	0	60
20	Herminiimonas arsenicoxydans	BProt BB	13467	1	3,424,307	45.7	25	22	0	3	0	45
21	Burkholderia ambifaria AMMD	BProt BB	13490	4	7,528,567	33.2	42	39	0	3	0	69
22	Ralstonia eutropha H16	BProt BB	13603	3	7,416,678	33.7	49	43	0	6	0	82
23	Rhodoferax ferrireducens T118	BProt BB	13908	2	4,969,784	40.4	46	38	1	7	0	80
24	Burkholderia cenocepacia HI2424	BProt BB	13918	4	7,702,840	33.2	42	39	0	3	0	70
25	Burkholderia cenocepacia AU 1054	BProt BB	13919	3	7,279,116	33.1	38	36	0	2	0	65
26	Burkholderia mallei NCTC 10229	BProt BB	13943	2	5,742,303	31.5	28	25	0	3	0	51
27	Burkholderia mallei NCTC 10247	BProt BB	13946	2	5,848,380	31.5	28	25	0	3	0	51
28	Burkholderia mallei SAVP1	BProt BB	13947	2	5,232,401	31.6	24	21	0	3	0	43
29	Burkholderia pseudomallei 668	BProt BB	13953	2	7,040,403	31.7	37	31	0	6	0	67
30	Burkholderia pseudomallei 1710b	BProt BB	13954	2	7,308,054	32.0	35	29	0	6	0	61
31	Acidovorax sp. JS42	BProt BB	15685	3	4,585,154	33.9	25	22	0	3	0	41
32	Acidovorax citrulli AAC00-1	BProt BB	15708	1	5,352,772	31.5	50	46	0	4	0	64
33	Cupriavidus taiwanensis	BProt BB	15733	3	6,476,522	33.0	7	5	0	2	0	17
34	Burkholderia pseudomallei 1106a	BProt BB	16182	2	7,089,249	31.7	36	30	0	6	0	63
35	Janthinobacterium sp. Marseille	BProt BB	16549	1	4,110,251	45.8	30	26	0	4	0	62
36	Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1	BProt BB	16679	1	2,159,490	55.2	8	8	0	0	0	8
37	Verminephrobacter eiseniae EF01-2	BProt BB	17187	2	5,597,943	34.8	14	12	0	2	0	24
38	Burkholderia multivorans ATCC 17616	BProt BB	17407	4	7,008,622	33.3	43	40	0	3	0	72
39	Burkholderia phymatum STM815	BProt BB	17409	4	8,676,562	37.7	69	56	1	12	0	112
40	Burkholderia ambifaria MC40-6	BProt BB	17411	4	7,642,536	33.6	49	44	1	4	0	77
41	Delftia acidovorans SPH-1	BProt BB	17413	1	6,767,514	33.5	60	56	0	4	0	87
42	Burkholderia phytofirmans PsJN	BProt BB	17463	3	8,214,658	37.7	57	51	0	6	0	102
43	Ralstonia pickettii 12J	BProt BB	17631	3	5,325,729	36.4	44	38	0	6	0	65
44	Burkholderia cenocepacia MC0-3	BProt BB	17929	3	7,971,389	33.4	48	45	0	3	0	85
45	Ralstonia pickettii 12D	BProt BB	18937	5	5,685,358	36.7	39	33	0	6	0	60
46	Burkholderia multivorans ATCC 17616	BProt BB	19401	4	7,008,810	33.3	42	39	0	3	0	71
47	Polynucleobacter necessarius subsp. necessarius STIR1	BProt BB	19991	1	1,560,469	54.4	2	2	0	0	0	4
48	Leptothrix cholodnii SP-6	BProt BB	20039	1	4,909,403	31.1	64	57	0	7	0	90
49	Bordetella petrii DSM 12804	BProt BB	28135	1	5,287,950	34.5	20	19	0	1	0	37
50	Comamonas testosteroni CNB-1	BProt BB	29203	2	5,464,824	38.5	34	32	0	2	0	55
51	Acidovorax ebreus TPSY	BProt BB	29975	1	3,796,573	33.2	26	23	0	3	0	40
52	Variovorax paradoxus S110	BProt BB	30453	2	6,754,997	32.5	47	42	0	5	0	71
53	Thiomonas intermedia K12	BProt BB	33641	3	3,462,095	36.2	20	17	0	3	0	32
54	Burkholderia glumae BGR1	BProt BB	33901	6	7,284,683	32.1	40	37	0	3	0	72
55	Burkholderia sp. CCGE1002	BProt BB	37719	4	7,884,858	36.7	56	48	0	8	0	99
56	Thiobacillus denitrificans ATCC 25259	BProt BH	13025	1	2,909,809	33.9	24	19	0	5	0	44
57	Methylobacillus flagellatus KT	BProt BM	10647	1	2,971,517	44.3	27	20	0	7	0	42
58	Methylovorus sp. SIP3-4	BProt BM	33241	3	3,082,007	45.4	24	18	0	6	0	38
59	Methylotenera mobilis JLW8	BProt BM	33319	1	2,547,570	54.5	19	16	0	3	0	39
60	Methylotenera sp. 301	BProt BM	39983	1	3,059,871	57.4	27	23	0	4	0	46
61	Neisseria gonorrhoeae FA 1090	BProt BN	23	1	2,153,922	47.3	4	3	0	1	0	3
62	Nitrosomonas europaea ATCC 19718	BProt BN	52	1	2,812,094	49.3	10	9	0	1	0	20
63	Neisseria meningitidis MC58	BProt BN	251	1	2,272,360	48.5	5	4	0	1	0	4
64	Neisseria meningitidis Z2491	BProt BN	252	1	2,184,406	48.2	5	4	0	1	0	4
65	Neisseria meningitidis FAM18	BProt BN	255	1	2,194,961	48.4	5	4	0	1	0	4
66	Chromobacterium violaceum ATCC 12472	BProt BN	444	1	4,751,080	35.2	39	36	1	2	0	73
67	Nitrosospira multiformis ATCC 25196	BProt BN	13912	4	3,234,309	46.1	20	18	0	2	0	32
68	Neisseria meningitidis 053442	BProt BN	16393	1	2,153,416	48.3	5	4	0	1	0	4
69	Neisseria gonorrhoeae NCCP11945	BProt BN	29335	2	2,236,178	47.6	4	3	0	1	0	4
70	Laribacter hongkongensis HLHK9	BProt BN	30817	1	3,169,329	37.7	19	18	0	1	0	31
71	Neisseria meningitidis 8013	BProt BN	34687	1	2,277,550	48.6	4	3	0	1	0	4
72	Neisseria meningitidis alpha14	BProt BN	39689	1	2,145,295	48.1	N/A	N/A	N/A	N/A	N/A	N/A
73	Dechloromonas aromatica RCB	BProt BR	9635	1	4,501,104	40.7	88	84	0	4	0	139
74	Azoarcus sp. BH72	BProt BR	13217	1	4,376,040	32.1	51	46	0	5	0	79
75	Aromatoleum aromaticum EbN1	BProt BR	13242	3	4,727,255	35.3	34	28	0	6	0	56
76	Thauera sp. MZ1T	BProt BR	20091	2	2,699,905	31.9	26	23	0	3	0	40

Acknowledgements:

This research is funded by:

A grant from the Danish Research Foundation.
A grant from the Danish Center for Scientific Computing DCSC

Developed by:

Original concept: Peter Hallin et al.
Redesign, Current Maintainer: Stefano Borini