Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
2Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
3Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
4Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
5Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
6Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
7Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
8Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
9Photobacterium profundum SS9BProt GV1312836,403,28058.3163
10Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
11Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
12Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
13Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
14Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
15Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
16Pseudomonas putida F1BProt GPs1390915,959,96438.11418
17Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
18Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
19Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
20Pseudomonas putida W619BProt GPs1705315,774,33038.61415
21Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
22Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
23Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
24Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
25Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
26Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
27Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
28Shewanella baltica OS195BProt GA1338945,547,54453.8146
29Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
30Escherichia coli APEC O1BProt GE1671835,497,65349.7141
31Serratia proteamaculans 568BProt GE1745925,495,65745.0142
32Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
33Klebsiella variicola At-22BProt GE3770115,458,50542.4131
34Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
35Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
36Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
37Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
38Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
39Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
40Shewanella baltica OS223BProt GA1798545,358,88453.7146
41Escherichia coli UMN026BProt GE3341535,358,20049.3152
42Escherichia coli 042BProt GE4064725,355,32349.5152
43Shewanella baltica OS155BProt GA1338655,342,89653.8155
44Shewanella baltica OS185BProt GA1764325,312,91053.7146
45Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
46Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
47Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
48Escherichia coli E24377ABProt GE1396075,249,28849.4142
49Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
50Escherichia coli CFT073BProt GE31315,231,42849.5141
51Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
52Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
53Escherichia coli ED1aBProt GE3340915,209,54849.3142
54Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
55Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
56Escherichia coli UTI89BProt GE1625925,179,97149.4141
57Escherichia coli S88BProt GE3337525,166,12149.4142
58Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
59Escherichia coli SE11BProt GE1805775,155,62649.3141
60Escherichia coli 55989BProt GE3341315,154,86249.3142
61Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
62Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
63Escherichia coli IAI39BProt GE3341115,132,06849.4142
64Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
65Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
66Escherichia coli IHE3034BProt GE4369315,108,38349.3131
67Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
68Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
69Vibrio sp. Ex25BProt GV4050725,089,02555.1154
70Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
71Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
72Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
73Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
74Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
75Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
76Shigella sonnei Ss046BProt GE1315155,055,31649.2142
77Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
78Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
79Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
80Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
81Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
82Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
83Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
84Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
85Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
86Escherichia coli 536BProt GE1623514,938,92049.5141
87Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
88Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
89Shigella flexneri 2002017BProt GE3363964,894,49249.4131
90Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
91Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
92Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
93Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
94Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
95Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
96Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
97Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
98Escherichia coli SE15BProt GE1905324,839,68349.3141
99Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
100Yersinia pestis CO92BProt GE3444,829,85552.4151
101Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
102Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
103Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
104Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
105Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
106Shewanella sp. MR-7BProt GA1390324,799,10952.1145
107Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
108Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
109Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
110Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
111Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
112Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
113Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
114Yersinia pestis Z176003BProt GE3654744,725,78852.3151
115Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
116Shewanella sp. MR-4BProt GA1390414,706,28752.1145
117Yersinia pestis KIM 10BProt GE28824,701,74552.3141
118Escherichia coli IAI1BProt GE3337314,700,56049.2131
119Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
120Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
121Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
122Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
123Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
124Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
125Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
126Enterobacter sp. 638BProt GE1746124,676,46147.1143
127Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
128Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
129Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
130Shigella boydii Sb227BProt GE1314624,646,52048.9141
131Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
132Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
133Escherichia coli HSBProt GE1395914,643,53849.2141
134Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
135Escherichia coli DH1BProt GE3003114,630,70749.2142
136Shewanella loihica PV-4BProt GA1390614,602,59446.3145
137Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
138Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
139Cronobacter turicensisBProt GE3996544,599,15542.7142
140Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
141Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
142Escherichia coli BW2952BProt GE3377514,578,15949.2142
143Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
144Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
145Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
146Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
147Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
148Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
149Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
150Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
151Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
152Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
153Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
154Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
155Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
156Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
157Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
158Vibrio fischeri ES114BProt GV1298634,284,05061.6144
159Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
160Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
161Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
162Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
163Vibrio cholerae O395BProt GV1566724,132,31952.5143
164Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
165Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
166Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
167Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
168Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
169Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
170Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
171Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
172Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
173Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
174Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
175Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
176Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
177Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
178Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
179Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
180Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
181Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
182Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
183Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
184Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
185Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
186Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
187Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
188Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
189Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
190Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
191Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
192Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
193Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
194Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
195Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
196Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
197Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
198Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
199Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
200Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
201Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
202Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
203Xylella fastidiosa M23BProt GX1845722,573,98748.3121
204Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
205Xylella fastidiosa M12BProt GX1782312,475,13048.1121
206Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
207Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
208Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
209Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
210Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
211Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
212Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
213Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
214Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
215Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
216Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
217Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
218Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
219Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
220Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
221Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
222Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
223Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
224Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
225Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
226Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
227Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
228Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
229Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
230Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
231Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
232Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
233Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
234Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
235Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
236Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
237Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
238Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
239Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
240Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
241Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
242Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
243Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
244Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
245Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
246Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
247Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
248Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
249Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
250Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
251Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
252Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
253Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
254Yersinia pestis D182038365454175,31952.2N/AN/AN/A
255Yersinia pestis D106004365074172,20252.3N/AN/AN/A
256Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
257Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
258Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
259Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
260Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
261Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
262Vibrio cholerae O395328532N/AN/AN/AN/AN/A
263Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
264Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A

Acknowledgements:

This research is funded by:

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