Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
2Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
3Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
4Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
5Yersinia pestis Z176003BProt GE3654744,725,78852.3151
6Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
7Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
8Yersinia pestis KIM 10BProt GE28824,701,74552.3141
9Yersinia pestis D182038365454175,31952.2N/AN/AN/A
10Yersinia pestis D106004365074172,20252.3N/AN/AN/A
11Yersinia pestis CO92BProt GE3444,829,85552.4151
12Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
13Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
14Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
15Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
16Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
17Xylella fastidiosa M23BProt GX1845722,573,98748.3121
18Xylella fastidiosa M12BProt GX1782312,475,13048.1121
19Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
20Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
21Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
22Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
23Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
24Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
25Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
26Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
27Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
28Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
29Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
30Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
31Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
32Vibrio sp. Ex25BProt GV4050725,089,02555.1154
33Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
34Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
35Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
36Vibrio fischeri ES114BProt GV1298634,284,05061.6144
37Vibrio cholerae O395BProt GV1566724,132,31952.5143
38Vibrio cholerae O395328532N/AN/AN/AN/AN/A
39Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
40Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
41Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
42Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
43Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
44Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
45Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
46Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
47Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
48Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
49Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
50Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
51Shigella sonnei Ss046BProt GE1315155,055,31649.2142
52Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
53Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
54Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
55Shigella flexneri 2002017BProt GE3363964,894,49249.4131
56Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
57Shigella boydii Sb227BProt GE1314624,646,52048.9141
58Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
59Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
60Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
61Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
62Shewanella sp. MR-7BProt GA1390324,799,10952.1145
63Shewanella sp. MR-4BProt GA1390414,706,28752.1145
64Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
65Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
66Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
67Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
68Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
69Shewanella loihica PV-4BProt GA1390614,602,59446.3145
70Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
71Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
72Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
73Shewanella baltica OS223BProt GA1798545,358,88453.7146
74Shewanella baltica OS195BProt GA1338945,547,54453.8146
75Shewanella baltica OS185BProt GA1764325,312,91053.7146
76Shewanella baltica OS155BProt GA1338655,342,89653.8155
77Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
78Serratia proteamaculans 568BProt GE1745925,495,65745.0142
79Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
80Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
81Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
82Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
83Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
84Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
85Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
86Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
87Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
88Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
89Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
90Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
91Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
92Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
93Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
94Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
95Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
96Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
97Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
98Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
99Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
100Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
101Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
102Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
103Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
104Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
105Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
106Pseudomonas putida W619BProt GPs1705315,774,33038.61415
107Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
108Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
109Pseudomonas putida F1BProt GPs1390915,959,96438.11418
110Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
111Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
112Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
113Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
114Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
115Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
116Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
117Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
118Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
119Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
120Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
121Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
122Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
123Photobacterium profundum SS9BProt GV1312836,403,28058.3163
124Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
125Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
126Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
127Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
128Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
129Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
130Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
131Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
132Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
133Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
134Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
135Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
136Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
137Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
138Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
139Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
140Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
141Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
142Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
143Klebsiella variicola At-22BProt GE3770115,458,50542.4131
144Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
145Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
146Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
147Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
148Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
149Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
150Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
151Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
152Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
153Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
154Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
155Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
156Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
157Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
158Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
159Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
160Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
161Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
162Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
163Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
164Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
165Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
166Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
167Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
168Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
169Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
170Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
171Escherichia coli UTI89BProt GE1625925,179,97149.4141
172Escherichia coli UMN026BProt GE3341535,358,20049.3152
173Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
174Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
175Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
176Escherichia coli SE15BProt GE1905324,839,68349.3141
177Escherichia coli SE11BProt GE1805775,155,62649.3141
178Escherichia coli S88BProt GE3337525,166,12149.4142
179Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
180Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
181Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
182Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
183Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
184Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
185Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
186Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
187Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
188Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
189Escherichia coli IHE3034BProt GE4369315,108,38349.3131
190Escherichia coli IAI39BProt GE3341115,132,06849.4142
191Escherichia coli IAI1BProt GE3337314,700,56049.2131
192Escherichia coli HSBProt GE1395914,643,53849.2141
193Escherichia coli ED1aBProt GE3340915,209,54849.3142
194Escherichia coli E24377ABProt GE1396075,249,28849.4142
195Escherichia coli DH1BProt GE3003114,630,70749.2142
196Escherichia coli CFT073BProt GE31315,231,42849.5141
197Escherichia coli BW2952BProt GE3377514,578,15949.2142
198Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
199Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
200Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
201Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
202Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
203Escherichia coli APEC O1BProt GE1671835,497,65349.7141
204Escherichia coli 55989BProt GE3341315,154,86249.3142
205Escherichia coli 536BProt GE1623514,938,92049.5141
206Escherichia coli 042BProt GE4064725,355,32349.5152
207Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
208Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
209Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
210Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
211Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
212Enterobacter sp. 638BProt GE1746124,676,46147.1143
213Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
214Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
215Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
216Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
217Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
218Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
219Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
220Cronobacter turicensisBProt GE3996544,599,15542.7142
221Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
222Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
223Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
224Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
225Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
226Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
227Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
228Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
229Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
230Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
231Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
232Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
233Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
234Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
235Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
236Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
237Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
238Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
239Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
240Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
241Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
242Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
243Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
244Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
245Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
246Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
247Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
248Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
249Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
250Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
251Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
252Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
253Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
254Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
255Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
256Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
257Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
258Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
259Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
260Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
261Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
262Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
263Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
264Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151

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