Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
2Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
3Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
4Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
5Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
6Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
7Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
8Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
9Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
10Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
11Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
12Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
13Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
14Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
15Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
16Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
17Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
18Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
19Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
20Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
21Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
22Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
23Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
24Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
25Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
26Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
27Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
28Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
29Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
30Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
31Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
32Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
33Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
34Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
35Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
36Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
37Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
38Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
39Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
40Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
41Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
42Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
43Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
44Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
45Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
46Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
47Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
48Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
49Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
50Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
51Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
52Vibrio cholerae O395328532N/AN/AN/AN/AN/A
53Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
54Yersinia pestis D106004365074172,20252.3N/AN/AN/A
55Yersinia pestis D182038365454175,31952.2N/AN/AN/A
56Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
57Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
58Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
59Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
60Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
61Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
62Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
63Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
64Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
65Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
66Yersinia pestis CO92BProt GE3444,829,85552.4151
67Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
68Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
69Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
70Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
71Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
72Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
73Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
74Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
75Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
76Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
77Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
78Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
79Yersinia pestis KIM 10BProt GE28824,701,74552.3141
80Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
81Escherichia coli CFT073BProt GE31315,231,42849.5141
82Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
83Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
84Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
85Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
86Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
87Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
88Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
89Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
90Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
91Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
92Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
93Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
94Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
95Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
96Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
97Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
98Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
99Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
100Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
101Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
102Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
103Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
104Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
105Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
106Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
107Vibrio fischeri ES114BProt GV1298634,284,05061.6144
108Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
109Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
110Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
111Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
112Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
113Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
114Photobacterium profundum SS9BProt GV1312836,403,28058.3163
115Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
116Shigella boydii Sb227BProt GE1314624,646,52048.9141
117Shigella sonnei Ss046BProt GE1315155,055,31649.2142
118Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
119Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
120Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
121Shewanella baltica OS155BProt GA1338655,342,89653.8155
122Shewanella baltica OS195BProt GA1338945,547,54453.8146
123Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
124Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
125Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
126Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
127Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
128Shewanella sp. MR-7BProt GA1390324,799,10952.1145
129Shewanella sp. MR-4BProt GA1390414,706,28752.1145
130Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
131Shewanella loihica PV-4BProt GA1390614,602,59446.3145
132Pseudomonas putida F1BProt GPs1390915,959,96438.11418
133Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
134Escherichia coli HSBProt GE1395914,643,53849.2141
135Escherichia coli E24377ABProt GE1396075,249,28849.4142
136Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
137Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
138Vibrio cholerae O395BProt GV1566724,132,31952.5143
139Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
140Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
141Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
142Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
143Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
144Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
145Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
146Escherichia coli 536BProt GE1623514,938,92049.5141
147Escherichia coli UTI89BProt GE1625925,179,97149.4141
148Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
149Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
150Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
151Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
152Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
153Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
154Escherichia coli APEC O1BProt GE1671835,497,65349.7141
155Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
156Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
157Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
158Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
159Pseudomonas putida W619BProt GPs1705315,774,33038.61415
160Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
161Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
162Serratia proteamaculans 568BProt GE1745925,495,65745.0142
163Enterobacter sp. 638BProt GE1746124,676,46147.1143
164Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
165Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
166Shewanella baltica OS185BProt GA1764325,312,91053.7146
167Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
168Xylella fastidiosa M12BProt GX1782312,475,13048.1121
169Shewanella baltica OS223BProt GA1798545,358,88453.7146
170Escherichia coli SE11BProt GE1805775,155,62649.3141
171Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
172Xylella fastidiosa M23BProt GX1845722,573,98748.3121
173Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
174Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
175Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
176Escherichia coli SE15BProt GE1905324,839,68349.3141
177Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
178Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
179Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
180Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
181Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
182Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
183Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
184Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
185Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
186Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
187Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
188Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
189Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
190Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
191Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
192Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
193Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
194Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
195Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
196Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
197Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
198Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
199Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
200Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
201Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
202Escherichia coli DH1BProt GE3003114,630,70749.2142
203Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
204Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
205Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
206Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
207Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
208Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
209Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
210Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
211Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
212Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
213Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
214Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
215Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
216Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
217Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
218Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
219Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
220Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
221Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
222Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
223Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
224Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
225Escherichia coli IAI1BProt GE3337314,700,56049.2131
226Escherichia coli S88BProt GE3337525,166,12149.4142
227Escherichia coli ED1aBProt GE3340915,209,54849.3142
228Escherichia coli IAI39BProt GE3341115,132,06849.4142
229Escherichia coli 55989BProt GE3341315,154,86249.3142
230Escherichia coli UMN026BProt GE3341535,358,20049.3152
231Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
232Shigella flexneri 2002017BProt GE3363964,894,49249.4131
233Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
234Escherichia coli BW2952BProt GE3377514,578,15949.2142
235Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
236Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
237Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
238Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
239Yersinia pestis Z176003BProt GE3654744,725,78852.3151
240Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
241Klebsiella variicola At-22BProt GE3770115,458,50542.4131
242Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
243Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
244Cronobacter turicensisBProt GE3996544,599,15542.7142
245Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
246Vibrio sp. Ex25BProt GV4050725,089,02555.1154
247Escherichia coli 042BProt GE4064725,355,32349.5152
248Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
249Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
250Escherichia coli IHE3034BProt GE4369315,108,38349.3131
251Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
252Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
253Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
254Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
255Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
256Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
257Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
258Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
259Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
260Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
261Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
262Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
263Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
264Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346

Acknowledgements:

This research is funded by:

Developed by: