Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
2Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
3Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
4Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
5Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
6Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
7Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
8Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
9Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
10Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
11Vibrio cholerae O395328532N/AN/AN/AN/AN/A
12Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
13Yersinia pestis D106004365074172,20252.3N/AN/AN/A
14Yersinia pestis D182038365454175,31952.2N/AN/AN/A
15Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
16Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
17Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
18Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
19Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
20Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
21Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
22Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
23Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
24Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
25Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
26Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
27Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
28Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
29Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
30Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
31Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
32Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
33Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
34Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
35Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
36Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
37Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
38Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
39Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
40Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
41Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
42Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
43Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
44Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
45Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
46Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
47Xylella fastidiosa M12BProt GX1782312,475,13048.1121
48Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
49Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
50Xylella fastidiosa M23BProt GX1845722,573,98748.3121
51Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
52Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
53Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
54Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
55Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
56Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
57Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
58Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
59Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
60Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
61Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
62Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
63Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
64Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
65Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
66Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
67Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
68Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
69Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
70Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
71Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
72Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
73Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
74Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
75Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
76Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
77Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
78Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
79Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
80Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
81Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
82Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
83Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
84Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
85Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
86Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
87Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
88Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
89Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
90Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
91Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
92Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
93Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
94Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
95Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
96Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
97Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
98Escherichia coli IAI1BProt GE3337314,700,56049.2131
99Shigella flexneri 2002017BProt GE3363964,894,49249.4131
100Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
101Klebsiella variicola At-22BProt GE3770115,458,50542.4131
102Escherichia coli IHE3034BProt GE4369315,108,38349.3131
103Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
104Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
105Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
106Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
107Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
108Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
109Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
110Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
111Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
112Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
113Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
114Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
115Yersinia pestis KIM 10BProt GE28824,701,74552.3141
116Escherichia coli CFT073BProt GE31315,231,42849.5141
117Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
118Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
119Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
120Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
121Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
122Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
123Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
124Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
125Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
126Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
127Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
128Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
129Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
130Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
131Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
132Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
133Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
134Vibrio fischeri ES114BProt GV1298634,284,05061.6144
135Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
136Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
137Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
138Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
139Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
140Shigella boydii Sb227BProt GE1314624,646,52048.9141
141Shigella sonnei Ss046BProt GE1315155,055,31649.2142
142Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
143Shewanella baltica OS195BProt GA1338945,547,54453.8146
144Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
145Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
146Shewanella sp. MR-7BProt GA1390324,799,10952.1145
147Shewanella sp. MR-4BProt GA1390414,706,28752.1145
148Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
149Shewanella loihica PV-4BProt GA1390614,602,59446.3145
150Pseudomonas putida F1BProt GPs1390915,959,96438.11418
151Escherichia coli HSBProt GE1395914,643,53849.2141
152Escherichia coli E24377ABProt GE1396075,249,28849.4142
153Vibrio cholerae O395BProt GV1566724,132,31952.5143
154Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
155Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
156Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
157Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
158Escherichia coli 536BProt GE1623514,938,92049.5141
159Escherichia coli UTI89BProt GE1625925,179,97149.4141
160Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
161Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
162Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
163Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
164Escherichia coli APEC O1BProt GE1671835,497,65349.7141
165Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
166Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
167Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
168Pseudomonas putida W619BProt GPs1705315,774,33038.61415
169Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
170Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
171Serratia proteamaculans 568BProt GE1745925,495,65745.0142
172Enterobacter sp. 638BProt GE1746124,676,46147.1143
173Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
174Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
175Shewanella baltica OS185BProt GA1764325,312,91053.7146
176Shewanella baltica OS223BProt GA1798545,358,88453.7146
177Escherichia coli SE11BProt GE1805775,155,62649.3141
178Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
179Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
180Escherichia coli SE15BProt GE1905324,839,68349.3141
181Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
182Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
183Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
184Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
185Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
186Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
187Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
188Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
189Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
190Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
191Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
192Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
193Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
194Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
195Escherichia coli DH1BProt GE3003114,630,70749.2142
196Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
197Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
198Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
199Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
200Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
201Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
202Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
203Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
204Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
205Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
206Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
207Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
208Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
209Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
210Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
211Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
212Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
213Escherichia coli S88BProt GE3337525,166,12149.4142
214Escherichia coli ED1aBProt GE3340915,209,54849.3142
215Escherichia coli IAI39BProt GE3341115,132,06849.4142
216Escherichia coli 55989BProt GE3341315,154,86249.3142
217Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
218Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
219Escherichia coli BW2952BProt GE3377514,578,15949.2142
220Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
221Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
222Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
223Cronobacter turicensisBProt GE3996544,599,15542.7142
224Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
225Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
226Yersinia pestis CO92BProt GE3444,829,85552.4151
227Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
228Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
229Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
230Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
231Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
232Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
233Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
234Shewanella baltica OS155BProt GA1338655,342,89653.8155
235Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
236Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
237Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
238Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
239Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
240Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
241Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
242Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
243Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
244Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
245Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
246Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
247Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
248Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
249Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
250Escherichia coli UMN026BProt GE3341535,358,20049.3152
251Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
252Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
253Yersinia pestis Z176003BProt GE3654744,725,78852.3151
254Vibrio sp. Ex25BProt GV4050725,089,02555.1154
255Escherichia coli 042BProt GE4064725,355,32349.5152
256Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
257Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
258Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
259Photobacterium profundum SS9BProt GV1312836,403,28058.3163
260Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
261Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
262Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
263Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
264Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161

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