Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Photobacterium profundum SS9BProt GV1312836,403,28058.3163
2Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
3Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
4Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
5Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
6Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
7Yersinia pestis CO92BProt GE3444,829,85552.4151
8Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
9Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
10Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
11Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
12Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
13Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
14Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
15Shewanella baltica OS155BProt GA1338655,342,89653.8155
16Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
17Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
18Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
19Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
20Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
21Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
22Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
23Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
24Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
25Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
26Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
27Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
28Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
29Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
30Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
31Escherichia coli UMN026BProt GE3341535,358,20049.3152
32Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
33Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
34Yersinia pestis Z176003BProt GE3654744,725,78852.3151
35Vibrio sp. Ex25BProt GV4050725,089,02555.1154
36Escherichia coli 042BProt GE4064725,355,32349.5152
37Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
38Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
39Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
40Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
41Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
42Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
43Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
44Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
45Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
46Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
47Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
48Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
49Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
50Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
51Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
52Yersinia pestis KIM 10BProt GE28824,701,74552.3141
53Escherichia coli CFT073BProt GE31315,231,42849.5141
54Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
55Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
56Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
57Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
58Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
59Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
60Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
61Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
62Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
63Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
64Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
65Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
66Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
67Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
68Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
69Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
70Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
71Vibrio fischeri ES114BProt GV1298634,284,05061.6144
72Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
73Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
74Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
75Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
76Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
77Shigella boydii Sb227BProt GE1314624,646,52048.9141
78Shigella sonnei Ss046BProt GE1315155,055,31649.2142
79Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
80Shewanella baltica OS195BProt GA1338945,547,54453.8146
81Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
82Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
83Shewanella sp. MR-7BProt GA1390324,799,10952.1145
84Shewanella sp. MR-4BProt GA1390414,706,28752.1145
85Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
86Shewanella loihica PV-4BProt GA1390614,602,59446.3145
87Pseudomonas putida F1BProt GPs1390915,959,96438.11418
88Escherichia coli HSBProt GE1395914,643,53849.2141
89Escherichia coli E24377ABProt GE1396075,249,28849.4142
90Vibrio cholerae O395BProt GV1566724,132,31952.5143
91Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
92Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
93Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
94Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
95Escherichia coli 536BProt GE1623514,938,92049.5141
96Escherichia coli UTI89BProt GE1625925,179,97149.4141
97Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
98Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
99Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
100Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
101Escherichia coli APEC O1BProt GE1671835,497,65349.7141
102Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
103Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
104Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
105Pseudomonas putida W619BProt GPs1705315,774,33038.61415
106Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
107Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
108Serratia proteamaculans 568BProt GE1745925,495,65745.0142
109Enterobacter sp. 638BProt GE1746124,676,46147.1143
110Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
111Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
112Shewanella baltica OS185BProt GA1764325,312,91053.7146
113Shewanella baltica OS223BProt GA1798545,358,88453.7146
114Escherichia coli SE11BProt GE1805775,155,62649.3141
115Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
116Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
117Escherichia coli SE15BProt GE1905324,839,68349.3141
118Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
119Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
120Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
121Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
122Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
123Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
124Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
125Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
126Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
127Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
128Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
129Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
130Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
131Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
132Escherichia coli DH1BProt GE3003114,630,70749.2142
133Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
134Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
135Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
136Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
137Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
138Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
139Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
140Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
141Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
142Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
143Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
144Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
145Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
146Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
147Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
148Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
149Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
150Escherichia coli S88BProt GE3337525,166,12149.4142
151Escherichia coli ED1aBProt GE3340915,209,54849.3142
152Escherichia coli IAI39BProt GE3341115,132,06849.4142
153Escherichia coli 55989BProt GE3341315,154,86249.3142
154Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
155Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
156Escherichia coli BW2952BProt GE3377514,578,15949.2142
157Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
158Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
159Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
160Cronobacter turicensisBProt GE3996544,599,15542.7142
161Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
162Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
163Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
164Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
165Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
166Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
167Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
168Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
169Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
170Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
171Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
172Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
173Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
174Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
175Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
176Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
177Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
178Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
179Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
180Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
181Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
182Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
183Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
184Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
185Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
186Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
187Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
188Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
189Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
190Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
191Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
192Escherichia coli IAI1BProt GE3337314,700,56049.2131
193Shigella flexneri 2002017BProt GE3363964,894,49249.4131
194Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
195Klebsiella variicola At-22BProt GE3770115,458,50542.4131
196Escherichia coli IHE3034BProt GE4369315,108,38349.3131
197Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
198Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
199Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
200Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
201Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
202Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
203Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
204Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
205Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
206Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
207Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
208Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
209Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
210Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
211Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
212Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
213Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
214Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
215Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
216Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
217Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
218Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
219Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
220Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
221Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
222Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
223Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
224Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
225Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
226Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
227Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
228Xylella fastidiosa M12BProt GX1782312,475,13048.1121
229Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
230Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
231Xylella fastidiosa M23BProt GX1845722,573,98748.3121
232Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
233Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
234Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
235Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
236Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
237Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
238Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
239Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
240Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
241Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
242Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
243Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
244Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
245Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
246Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
247Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
248Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
249Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
250Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
251Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
252Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
253Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
254Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
255Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
256Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
257Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
258Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
259Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
260Vibrio cholerae O395328532N/AN/AN/AN/AN/A
261Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
262Yersinia pestis D106004365074172,20252.3N/AN/AN/A
263Yersinia pestis D182038365454175,31952.2N/AN/AN/A
264Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A

Acknowledgements:

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