Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATHisKA
Count
HisKA 1
Count
HisKA 2
Count
HisKA 3
Count
HWE HK
Count
RRReceiver
Count
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/AN/AN/AN/A
2Escherichia coli B str. REL606182811N/AN/AN/AN/AN/AN/AN/AN/A
3Vibrio cholerae O395328532N/AN/AN/AN/AN/AN/AN/AN/A
4Shewanella violacea DSS12347391N/AN/AN/AN/AN/AN/AN/AN/A
5Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/AN/AN/AN/A
6Halorhodospira halophila SL1BProt GC1576712,678,45232.0191900033
7Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5201703033
8Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.4535003083
9Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.6575502092
10Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.7504405179
11Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.7474204180
12Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.7535003081
13Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.7545103084
14Azotobacter vinelandii DJBProt GPs1615,365,31834.3333102046
15Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.59900023
16Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.9393205268
17Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9191801039
18Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0393304270
19Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.0393205268
20Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3423505273
21Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4473807277
22Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8565501096
23Pseudomonas entomophila L48BProt GPs1680015,888,78035.8514902080
24Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1171700029
25Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1575403077
26Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3302802057
27Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3282602057
28Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4312803064
29Methylococcus capsulatus str. BathBProt GM2113,304,56136.4141301022
30Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.76864040113
31Pseudomonas putida GB-1BProt GPs1762916,078,43038.1625803192
32Pseudomonas putida F1BProt GPs1390915,959,96438.1635903197
33Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4343202067
34Pseudomonas putida KT2440BProt GPs26716,181,86338.5585403189
35Pseudomonas putida W619BProt GPs1705315,774,33038.6585412187
36Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.56361020101
37Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.96461030105
38Edwardsiella tarda EIB202BProt GE2853923,804,16640.3242103038
39Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.8615802189
40Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2121200013
41Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.7605702185
42Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8252302048
43Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1585602085
44Klebsiella variicola At-22BProt GE3770115,458,50542.4262402038
45Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5231706044
46Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6201802030
47Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6282602038
48Cronobacter turicensisBProt GE3996544,599,15542.7212001033
49Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9272502038
50Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1323101060
51Klebsiella pneumoniae 342BProt GE2847135,920,25743.1262402038
52Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3212001033
53Serratia proteamaculans 568BProt GE1745925,495,65745.0282503040
54Dickeya dadantii Ech703BProt GE3306914,679,45045.0201802034
55Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3222200040
56Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3121200027
57Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4332904050
58Citrobacter rodentium ICC168BProt GE3468545,444,28345.5211704032
59Dickeya zeae Ech1591BProt GE3129514,813,85445.5211803033
60Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.58800019
61Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.16461030119
62Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2242004040
63Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3212001033
64Shewanella loihica PV-4BProt GA1390614,602,59446.3302802058
65Dickeya dadantii Ech586BProt GE3366714,818,39446.4232003038
66Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4151302028
67Shewanella amazonensis SB2BBProt GA1338514,306,14246.4323002061
68Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4151302028
69Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6141202027
70Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6141301026
71Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6141202027
72Enterobacter sp. 638BProt GE1746124,676,46147.1231904034
73Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8242103038
74Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8232003038
75Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8242103038
76Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8242103039
77Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8232003037
78Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8212001038
79Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8242103038
80Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8242103037
81Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8212001038
82Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9242202038
83Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9232003037
84Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9242103038
85Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9232003037
86Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9242103037
87Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0232003038
88Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0272601063
89Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1221804034
90Xylella fastidiosa M12BProt GX1782312,475,13048.18800019
91Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1232003037
92Xylella fastidiosa Temecula1BProt GX28522,521,14848.29900021
93Xylella fastidiosa M23BProt GX1845722,573,98748.39900021
94Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4191900035
95Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6211803034
96Shigella boydii Sb227BProt GE1314624,646,52048.9211803035
97Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0201703033
98Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0191504031
99Shigella dysenteriae Sd197BProt GE1314534,560,91149.0181404030
100Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1201802035
101Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1191702032
102Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/AN/AN/AN/A
103Escherichia coli ATCC 8739BProt GE1808314,746,21849.1252203039
104Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2232003036
105Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2232003036
106Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2221903035
107Escherichia coli HSBProt GE1395914,643,53849.2232003037
108Escherichia coli DH1BProt GE3003114,630,70749.2232003036
109Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2232003037
110Escherichia coli IAI1BProt GE3337314,700,56049.2221903036
111Escherichia coli BW2952BProt GE3377514,578,15949.2232003037
112Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2232003037
113Shigella sonnei Ss046BProt GE1315155,055,31649.2232003036
114Escherichia coli SE11BProt GE1805775,155,62649.3221903036
115Escherichia coli SE15BProt GE1905324,839,68349.3232003037
116Escherichia coli ED1aBProt GE3340915,209,54849.3242004039
117Escherichia coli IHE3034BProt GE4369315,108,38349.3232003037
118Escherichia coli UMN026BProt GE3341535,358,20049.3232003037
119Escherichia coli 55989BProt GE3341315,154,86249.3232003037
120Shigella flexneri 2a str. 301BProt GE31024,828,82149.3201802034
121Escherichia coli S88BProt GE3337525,166,12149.4242103038
122Escherichia coli IAI39BProt GE3341115,132,06849.4221903036
123Shigella flexneri 2002017BProt GE3363964,894,49249.4181602033
124Escherichia coli UTI89BProt GE1625925,179,97149.4242103037
125Escherichia coli E24377ABProt GE1396075,249,28849.4221903036
126Escherichia coli 042BProt GE4064725,355,32349.5221903035
127Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5232003037
128Escherichia coli 536BProt GE1623514,938,92049.5232003038
129Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5242004037
130Escherichia coli SMS-3-5BProt GE1946955,215,37749.5232003038
131Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5242004038
132Escherichia coli CFT073BProt GE31315,231,42849.5252203040
133Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5171403031
134Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5242004038
135Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5242004038
136Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6242004038
137Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7151500029
138Escherichia coli APEC O1BProt GE1671835,497,65349.7262303041
139Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9121101025
140Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1211803034
141Escherichia coli O26:H11 str. 11368325095158,29150.6000000
142Escherichia coli O103:H2 str. 1200932511275,54650.9000000
143Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0131300021
144Escherichia coli O111:H- str. 11128325136395,00452.0000000
145Shewanella sp. ANA-3BProt GA1390525,251,14652.1302703059
146Shewanella sp. MR-4BProt GA1390414,706,28752.1282404059
147Shewanella sp. MR-7BProt GA1390324,799,10952.1272304058
148Yersinia pestis D182038365454175,31952.2000000
149Yersinia pestis Pestoides FBProt GE1670034,725,86252.3191702032
150Yersinia pestis D106004365074172,20252.3000000
151Yersinia pestis AntiquaBProt GE1664544,879,83652.3222002033
152Yersinia pestis KIM 10BProt GE28824,701,74552.3201802032
153Yersinia pestis Z176003BProt GE3654744,725,78852.3201901030
154Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3211902033
155Yersinia pestis CO92BProt GE3444,829,85552.4181701031
156Yersinia pestis Nepal516BProt GE1664634,646,28652.4201901031
157Vibrio cholerae M66-2BProt GV3285123,938,90552.4272403056
158Yersinia pestis AngolaBProt GE1606734,687,01452.40N/AN/AN/AN/A0
159Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4222002033
160Vibrio cholerae O395BProt GV1566724,132,31952.5272403056
161Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5211902032
162Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5262303053
163Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5222002033
164Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7272403056
165Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8222002033
166Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8232003037
167Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0151302032
168Escherichia coli RS218VDCP19411140,20753.1000000
169Vibrio vulnificus CMCP6BProt GV34925,126,79753.3383503075
170Vibrio vulnificus YJ016BProt GV143035,260,08653.3393603077
171Shewanella baltica OS185BProt GA1764325,312,91053.7272403057
172Shewanella baltica OS223BProt GA1798545,358,88453.7272403059
173Shewanella baltica OS155BProt GA1338655,342,89653.8242103052
174Shewanella baltica OS195BProt GA1338945,547,54453.8282503060
175Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9383503074
176Shewanella oneidensis MR-1BProt GA33525,131,41654.1262402061
177Saccharophagus degradans 2-40BProt GA31615,057,53154.2373601077
178Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6333102059
179Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6393603066
180Shewanella denitrificans OS217BProt GA1339014,545,90654.9201802048
181Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1540106
182Vibrio sp. Ex25BProt GV4050725,089,02555.1363303060
183Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1383403174
184Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.2121101016
185Shewanella sp. W3-18-1BProt GA1390214,708,38055.4232201048
186Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4414001070
187Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4242103051
188Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5252401048
189Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.64400010
190Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7430106
191Vibrio splendidus LGP32BProt GV3281524,974,82156.1373502066
192Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.3393504076
193Kangiella koreensis DSM 16069BProt GK2944312,852,07356.3141202024
194Shewanella piezotolerans WP3BProt GA1767515,396,47656.7322903064
195Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9141400027
196Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2141202024
197Psychrobacter arcticus 273-4BProt GPs963312,650,70157.210901016
198Coxiella burnetii RSA 331BProt GL1679122,053,74457.37700012
199Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.47700012
200Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.47700012
201Coxiella burnetii RSA 493BProt GL4122,032,67457.47700012
202Marinomonas sp. MWYL1BProt GO1744515,100,34457.4403901073
203Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5530206
204Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.67700013
205Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.8121200021
206Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8430105
207Photorhabdus asymbioticaBProt GE3057725,094,13857.9151302026
208Photobacterium profundum SS9BProt GV1312836,403,28058.3333003066
209Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3650107
210Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4302802053
211Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7540106
212Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8540106
213Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8540106
214Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.54400010
215Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6161600020
216Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.69702011
217Psychromonas ingrahamii 37BProt GA1618714,559,59859.9202000034
218Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9323101057
219Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0430104
220Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7171700022
221Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8151500021
222Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0161600021
223Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0222101044
224Proteus mirabilis HI4320BProt GE1262424,099,89561.1131102022
225Acinetobacter sp. DR1BProt GPs4610514,152,54361.3151500021
226Legionella pneumophila str. CorbyBProt GL1749113,576,47061.59900011
227Legionella pneumophila str. LensBProt GL1312623,405,51961.69900011
228Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.69900011
229Vibrio fischeri ES114BProt GV1298634,284,05061.6242202047
230Legionella pneumophila str. ParisBProt GL1312723,635,49561.7101000012
231Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.79900011
232Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8110003
233Vibrio fischeri MJ11BProt GV1939334,503,33661.8232102047
234Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8320105
235Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8430106
236Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0320105
237Colwellia psychrerythraea 34HBProt GA27515,373,18062.0383602071
238Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0430106
239Haemophilus somnus 2336BProt GPa38812,263,85762.6430105
240Haemophilus somnus 129PTBProt GPa32222,012,87862.8320104
241Legionella longbeachae NSW150BProt GL3957924,149,15862.9121200019
242Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0210102
243Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8000000
244Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4330003
245Francisella novicida U112BProt GT1608811,910,03167.5330003
246Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7330002
247Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7220002
248Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7220002
249Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8220002
250Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8110001
251Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8110001
252Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/AN/AN/AN/A
253Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8220001
254Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4210102
255Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4000000
256Candidatus Riesia pediculicola USDABProt GE290652582,12771.4000000
257Candidatus Blochmannia floridanusBProt GE4431705,55772.6000000
258Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7000000
259Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7000000
260Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7000000
261Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7000000
262Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5000001
263Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8000000
264Candidatus Carsonella ruddii PVBProt GC179771159,66283.4000000

Acknowledgements:

This research is funded by:

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