Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATHisKA
Count
HisKA 1
Count
HisKA 2
Count
HisKA 3
Count
HWE HK
Count
RRReceiver
Count
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/AN/AN/AN/A
2Escherichia coli O26:H11 str. 11368325095158,29150.6000000
3Escherichia coli O103:H2 str. 1200932511275,54650.9000000
4Escherichia coli O111:H- str. 11128325136395,00452.0000000
5Vibrio cholerae O395328532N/AN/AN/AN/AN/AN/AN/AN/A
6Shewanella violacea DSS12347391N/AN/AN/AN/AN/AN/AN/AN/A
7Yersinia pestis D106004365074172,20252.3000000
8Yersinia pestis D182038365454175,31952.2000000
9Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/AN/AN/AN/A
10Escherichia coli B str. REL606182811N/AN/AN/AN/AN/AN/AN/AN/A
11Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5231706044
12Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2121200013
13Colwellia psychrerythraea 34HBProt GA27515,373,18062.0383602071
14Saccharophagus degradans 2-40BProt GA31615,057,53154.2373601077
15Shewanella oneidensis MR-1BProt GA33525,131,41654.1262402061
16Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0151302032
17Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1323101060
18Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1383403174
19Shewanella amazonensis SB2BBProt GA1338514,306,14246.4323002061
20Shewanella baltica OS155BProt GA1338655,342,89653.8242103052
21Shewanella baltica OS195BProt GA1338945,547,54453.8282503060
22Shewanella denitrificans OS217BProt GA1339014,545,90654.9201802048
23Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4302802053
24Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5252401048
25Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4414001070
26Shewanella sp. W3-18-1BProt GA1390214,708,38055.4232201048
27Shewanella sp. MR-7BProt GA1390324,799,10952.1272304058
28Shewanella sp. MR-4BProt GA1390414,706,28752.1282404059
29Shewanella sp. ANA-3BProt GA1390525,251,14652.1302703059
30Shewanella loihica PV-4BProt GA1390614,602,59446.3302802058
31Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9323101057
32Psychromonas ingrahamii 37BProt GA1618714,559,59859.9202000034
33Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4343202067
34Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8252302048
35Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.3393504076
36Shewanella baltica OS185BProt GA1764325,312,91053.7272403057
37Shewanella piezotolerans WP3BProt GA1767515,396,47656.7322903064
38Shewanella baltica OS223BProt GA1798545,358,88453.7272403059
39Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9383503074
40Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4242103051
41Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/AN/AN/AN/A
42Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0131300021
43Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.64400010
44Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8000000
45Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7151500029
46Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5201703033
47Halorhodospira halophila SL1BProt GC1576712,678,45232.0191900033
48Candidatus Carsonella ruddii PVBProt GC179771159,66283.4000000
49Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9191801039
50Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.59900023
51Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3121200027
52Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8565501096
53Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4191900035
54Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9121101025
55Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9272502038
56Yersinia pestis CO92BProt GE3444,829,85552.4181701031
57Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8232003037
58Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2232003037
59Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5242004038
60Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1232003037
61Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8242103038
62Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7000000
63Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5242004038
64Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5000001
65Yersinia pestis KIM 10BProt GE28824,701,74552.3201802032
66Shigella flexneri 2a str. 301BProt GE31024,828,82149.3201802034
67Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7000000
68Escherichia coli CFT073BProt GE31315,231,42849.5252203040
69Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0191504031
70Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9242103037
71Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1191702032
72Candidatus Blochmannia floridanusBProt GE4431705,55772.6000000
73Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2141202024
74Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9242202038
75Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3211902033
76Proteus mirabilis HI4320BProt GE1262424,099,89561.1131102022
77Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2242004040
78Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3212001033
79Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4222002033
80Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6211803034
81Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8212001038
82Shigella dysenteriae Sd197BProt GE1314534,560,91149.0181404030
83Shigella boydii Sb227BProt GE1314624,646,52048.9211803035
84Shigella sonnei Ss046BProt GE1315155,055,31649.2232003036
85Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4000000
86Escherichia coli HSBProt GE1395914,643,53849.2232003037
87Escherichia coli E24377ABProt GE1396075,249,28849.4221903036
88Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0201703033
89Yersinia pestis AngolaBProt GE1606734,687,01452.40N/AN/AN/AN/A0
90Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8222002033
91Escherichia coli 536BProt GE1623514,938,92049.5232003038
92Escherichia coli UTI89BProt GE1625925,179,97149.4242103037
93Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.58800019
94Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8000000
95Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1201802035
96Yersinia pestis AntiquaBProt GE1664544,879,83652.3222002033
97Yersinia pestis Nepal516BProt GE1664634,646,28652.4201901031
98Yersinia pestis Pestoides FBProt GE1670034,725,86252.3191702032
99Escherichia coli APEC O1BProt GE1671835,497,65349.7262303041
100Serratia proteamaculans 568BProt GE1745925,495,65745.0282503040
101Enterobacter sp. 638BProt GE1746124,676,46147.1231904034
102Escherichia coli SE11BProt GE1805775,155,62649.3221903036
103Escherichia coli ATCC 8739BProt GE1808314,746,21849.1252203039
104Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8232003038
105Escherichia coli SE15BProt GE1905324,839,68349.3232003037
106Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8242103039
107Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9232003037
108Escherichia coli SMS-3-5BProt GE1946955,215,37749.5232003038
109Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9232003037
110Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0232003038
111Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2232003037
112Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6141301026
113Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2232003036
114Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8242103037
115Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6282602038
116Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6242004038
117Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9242103038
118Klebsiella pneumoniae 342BProt GE2847135,920,25743.1262402038
119Edwardsiella tarda EIB202BProt GE2853923,804,16640.3242103038
120Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5211902032
121Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5222002033
122Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2221903035
123Candidatus Riesia pediculicola USDABProt GE290652582,12771.4000000
124Escherichia coli DH1BProt GE3003114,630,70749.2232003036
125Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5242004038
126Photorhabdus asymbioticaBProt GE3057725,094,13857.9151302026
127Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2232003036
128Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8242103038
129Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8232003037
130Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8212001038
131Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7000000
132Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7000000
133Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.54400010
134Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1221804034
135Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5171403031
136Dickeya zeae Ech1591BProt GE3129514,813,85445.5211803033
137Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5232003037
138Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8242103038
139Dickeya dadantii Ech703BProt GE3306914,679,45045.0201802034
140Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1211803034
141Escherichia coli IAI1BProt GE3337314,700,56049.2221903036
142Escherichia coli S88BProt GE3337525,166,12149.4242103038
143Escherichia coli ED1aBProt GE3340915,209,54849.3242004039
144Escherichia coli IAI39BProt GE3341115,132,06849.4221903036
145Escherichia coli 55989BProt GE3341315,154,86249.3232003037
146Escherichia coli UMN026BProt GE3341535,358,20049.3232003037
147Shigella flexneri 2002017BProt GE3363964,894,49249.4181602033
148Dickeya dadantii Ech586BProt GE3366714,818,39446.4232003038
149Escherichia coli BW2952BProt GE3377514,578,15949.2232003037
150Citrobacter rodentium ICC168BProt GE3468545,444,28345.5211704032
151Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6141202027
152Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6201802030
153Yersinia pestis Z176003BProt GE3654744,725,78852.3201901030
154Klebsiella variicola At-22BProt GE3770115,458,50542.4262402038
155Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6141202027
156Cronobacter turicensisBProt GE3996544,599,15542.7212001033
157Escherichia coli 042BProt GE4064725,355,32349.5221903035
158Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5242004037
159Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3212001033
160Escherichia coli IHE3034BProt GE4369315,108,38349.3232003037
161Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4151302028
162Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4332904050
163Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4151302028
164Kangiella koreensis DSM 16069BProt GK2944312,852,07356.3141202024
165Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.79900011
166Coxiella burnetii RSA 493BProt GL4122,032,67457.47700012
167Legionella pneumophila str. LensBProt GL1312623,405,51961.69900011
168Legionella pneumophila str. ParisBProt GL1312723,635,49561.7101000012
169Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.67700013
170Coxiella burnetii RSA 331BProt GL1679122,053,74457.37700012
171Legionella pneumophila str. CorbyBProt GL1749113,576,47061.59900011
172Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.69900011
173Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.47700012
174Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.47700012
175Legionella longbeachae NSW150BProt GL3957924,149,15862.9121200019
176Methylococcus capsulatus str. BathBProt GM2113,304,56136.4141301022
177Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1171700029
178Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3222200040
179Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.16461030119
180Marinomonas sp. MWYL1BProt GO1744515,100,34457.4403901073
181Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8110003
182Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.69702011
183Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8320105
184Haemophilus somnus 129PTBProt GPa32222,012,87862.8320104
185Haemophilus somnus 2336BProt GPa38812,263,85762.6430105
186Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8430106
187Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5530206
188Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1540106
189Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0320105
190Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0430106
191Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7540106
192Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8540106
193Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8540106
194Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0430104
195Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8430105
196Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7430106
197Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.56361020101
198Azotobacter vinelandii DJBProt GPs1615,365,31834.3333102046
199Pseudomonas putida KT2440BProt GPs26716,181,86338.5585403189
200Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.8615802189
201Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.76864040113
202Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.4535003083
203Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.7605702185
204Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.7545103084
205Psychrobacter arcticus 273-4BProt GPs963312,650,70157.210901016
206Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6161600020
207Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1585602085
208Pseudomonas putida F1BProt GPs1390915,959,96438.1635903197
209Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.8121200021
210Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.2121101016
211Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.6575502092
212Pseudomonas entomophila L48BProt GPs1680015,888,78035.8514902080
213Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1575403077
214Pseudomonas putida W619BProt GPs1705315,774,33038.6585412187
215Pseudomonas putida GB-1BProt GPs1762916,078,43038.1625803192
216Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8151500021
217Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0272601063
218Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7171700022
219Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0161600021
220Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.7535003081
221Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.96461030105
222Acinetobacter sp. DR1BProt GPs4610514,152,54361.3151500021
223Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3650107
224Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0210102
225Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4210102
226Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7220002
227Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9141400027
228Francisella novicida U112BProt GT1608811,910,03167.5330003
229Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8220001
230Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8110001
231Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7330002
232Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8220002
233Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8110001
234Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4330003
235Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/AN/AN/AN/A
236Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7220002
237Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5262303053
238Vibrio vulnificus CMCP6BProt GV34925,126,79753.3383503075
239Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6393603066
240Vibrio vulnificus YJ016BProt GV143035,260,08653.3393603077
241Vibrio fischeri ES114BProt GV1298634,284,05061.6242202047
242Photobacterium profundum SS9BProt GV1312836,403,28058.3333003066
243Vibrio cholerae O395BProt GV1566724,132,31952.5272403056
244Vibrio fischeri MJ11BProt GV1939334,503,33661.8232102047
245Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6333102059
246Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0222101044
247Vibrio splendidus LGP32BProt GV3281524,974,82156.1373502066
248Vibrio cholerae M66-2BProt GV3285123,938,90552.4272403056
249Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7272403056
250Vibrio sp. Ex25BProt GV4050725,089,02555.1363303060
251Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.0393205268
252Xylella fastidiosa Temecula1BProt GX28522,521,14848.29900021
253Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.9393205268
254Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3423505273
255Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3282602057
256Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4473807277
257Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3302802057
258Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.7474204180
259Xylella fastidiosa M12BProt GX1782312,475,13048.18800019
260Xylella fastidiosa M23BProt GX1845722,573,98748.39900021
261Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4312803064
262Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0393304270
263Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.7504405179
264Escherichia coli RS218VDCP19411140,20753.1000000

Acknowledgements:

This research is funded by:

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