Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
2Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
3Vibrio cholerae O395328532N/AN/AN/AN/AN/A
4Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
5Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
6Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
7Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
8Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
9Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
10Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
11Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
12Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
13Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
14Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
15Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
16Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
17Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
18Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
19Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
20Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
21Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
22Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
23Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
24Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
25Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
26Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
27Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
28Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
29Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
30Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
31Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
32Pseudomonas putida F1BProt GPs1390915,959,96438.11418
33Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
34Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
35Pseudomonas putida W619BProt GPs1705315,774,33038.61415
36Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
37Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
38Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
39Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
40Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
41Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
42Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
43Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
44Klebsiella variicola At-22BProt GE3770115,458,50542.4131
45Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
46Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
47Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
48Cronobacter turicensisBProt GE3996544,599,15542.7142
49Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
50Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
51Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
52Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
53Serratia proteamaculans 568BProt GE1745925,495,65745.0142
54Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
55Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
56Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
57Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
58Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
59Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
60Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
61Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
62Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
63Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
64Shewanella loihica PV-4BProt GA1390614,602,59446.3145
65Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
66Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
67Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
68Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
69Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
70Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
71Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
72Enterobacter sp. 638BProt GE1746124,676,46147.1143
73Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
74Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
75Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
76Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
77Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
78Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
79Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
80Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
81Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
82Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
83Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
84Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
85Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
86Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
87Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
88Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
89Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
90Xylella fastidiosa M12BProt GX1782312,475,13048.1121
91Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
92Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
93Xylella fastidiosa M23BProt GX1845722,573,98748.3121
94Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
95Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
96Shigella boydii Sb227BProt GE1314624,646,52048.9141
97Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
98Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
99Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
100Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
101Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
102Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
103Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
104Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
105Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
106Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
107Escherichia coli HSBProt GE1395914,643,53849.2141
108Escherichia coli DH1BProt GE3003114,630,70749.2142
109Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
110Escherichia coli IAI1BProt GE3337314,700,56049.2131
111Escherichia coli BW2952BProt GE3377514,578,15949.2142
112Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
113Shigella sonnei Ss046BProt GE1315155,055,31649.2142
114Escherichia coli SE11BProt GE1805775,155,62649.3141
115Escherichia coli SE15BProt GE1905324,839,68349.3141
116Escherichia coli ED1aBProt GE3340915,209,54849.3142
117Escherichia coli IHE3034BProt GE4369315,108,38349.3131
118Escherichia coli UMN026BProt GE3341535,358,20049.3152
119Escherichia coli 55989BProt GE3341315,154,86249.3142
120Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
121Escherichia coli S88BProt GE3337525,166,12149.4142
122Escherichia coli IAI39BProt GE3341115,132,06849.4142
123Shigella flexneri 2002017BProt GE3363964,894,49249.4131
124Escherichia coli UTI89BProt GE1625925,179,97149.4141
125Escherichia coli E24377ABProt GE1396075,249,28849.4142
126Escherichia coli 042BProt GE4064725,355,32349.5152
127Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
128Escherichia coli 536BProt GE1623514,938,92049.5141
129Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
130Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
131Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
132Escherichia coli CFT073BProt GE31315,231,42849.5141
133Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
134Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
135Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
136Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
137Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
138Escherichia coli APEC O1BProt GE1671835,497,65349.7141
139Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
140Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
141Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
142Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
143Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
144Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
145Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
146Shewanella sp. MR-4BProt GA1390414,706,28752.1145
147Shewanella sp. MR-7BProt GA1390324,799,10952.1145
148Yersinia pestis D182038365454175,31952.2N/AN/AN/A
149Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
150Yersinia pestis D106004365074172,20252.3N/AN/AN/A
151Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
152Yersinia pestis KIM 10BProt GE28824,701,74552.3141
153Yersinia pestis Z176003BProt GE3654744,725,78852.3151
154Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
155Yersinia pestis CO92BProt GE3444,829,85552.4151
156Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
157Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
158Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
159Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
160Vibrio cholerae O395BProt GV1566724,132,31952.5143
161Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
162Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
163Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
164Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
165Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
166Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
167Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
168Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
169Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
170Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
171Shewanella baltica OS185BProt GA1764325,312,91053.7146
172Shewanella baltica OS223BProt GA1798545,358,88453.7146
173Shewanella baltica OS155BProt GA1338655,342,89653.8155
174Shewanella baltica OS195BProt GA1338945,547,54453.8146
175Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
176Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
177Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
178Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
179Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
180Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
181Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
182Vibrio sp. Ex25BProt GV4050725,089,02555.1154
183Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
184Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
185Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
186Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
187Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
188Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
189Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
190Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
191Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
192Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
193Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
194Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
195Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
196Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
197Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
198Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
199Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
200Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
201Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
202Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
203Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
204Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
205Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
206Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
207Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
208Photobacterium profundum SS9BProt GV1312836,403,28058.3163
209Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
210Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
211Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
212Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
213Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
214Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
215Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
216Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
217Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
218Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
219Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
220Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
221Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
222Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
223Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
224Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
225Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
226Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
227Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
228Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
229Vibrio fischeri ES114BProt GV1298634,284,05061.6144
230Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
231Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
232Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
233Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
234Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
235Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
236Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
237Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
238Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
239Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
240Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
241Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
242Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
243Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
244Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
245Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
246Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
247Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
248Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
249Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
250Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
251Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
252Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
253Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
254Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
255Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
256Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
257Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
258Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
259Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
260Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
261Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
262Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
263Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
264Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A

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