Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
2Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
3Vibrio cholerae O395328532N/AN/AN/AN/AN/A
4Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
5Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
6Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
7Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
8Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
9Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
10Yersinia pestis D106004365074172,20252.3N/AN/AN/A
11Yersinia pestis D182038365454175,31952.2N/AN/AN/A
12Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
13Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
14Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
15Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
16Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
17Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
18Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
19Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
20Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
21Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
22Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
23Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
24Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
25Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
26Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
27Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
28Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
29Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
30Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
31Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
32Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
33Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
34Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
35Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
36Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
37Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
38Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
39Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
40Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
41Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
42Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
43Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
44Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
45Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
46Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
47Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
48Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
49Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
50Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
51Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
52Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
53Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
54Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
55Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
56Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
57Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
58Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
59Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
60Xylella fastidiosa M12BProt GX1782312,475,13048.1121
61Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
62Xylella fastidiosa M23BProt GX1845722,573,98748.3121
63Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
64Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
65Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
66Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
67Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
68Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
69Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
70Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
71Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
72Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
73Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
74Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
75Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
76Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
77Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
78Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
79Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
80Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
81Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
82Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
83Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
84Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
85Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
86Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
87Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
88Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
89Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
90Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
91Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
92Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
93Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
94Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
95Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
96Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
97Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
98Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
99Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
100Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
101Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
102Vibrio cholerae O395BProt GV1566724,132,31952.5143
103Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
104Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
105Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
106Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
107Vibrio fischeri ES114BProt GV1298634,284,05061.6144
108Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
109Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
110Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
111Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
112Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
113Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
114Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
115Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
116Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
117Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
118Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
119Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
120Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
121Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
122Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
123Escherichia coli BW2952BProt GE3377514,578,15949.2142
124Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
125Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
126Cronobacter turicensisBProt GE3996544,599,15542.7142
127Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
128Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
129Shewanella loihica PV-4BProt GA1390614,602,59446.3145
130Escherichia coli DH1BProt GE3003114,630,70749.2142
131Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
132Escherichia coli HSBProt GE1395914,643,53849.2141
133Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
134Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
135Shigella boydii Sb227BProt GE1314624,646,52048.9141
136Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
137Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
138Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
139Enterobacter sp. 638BProt GE1746124,676,46147.1143
140Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
141Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
142Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
143Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
144Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
145Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
146Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
147Escherichia coli IAI1BProt GE3337314,700,56049.2131
148Yersinia pestis KIM 10BProt GE28824,701,74552.3141
149Shewanella sp. MR-4BProt GA1390414,706,28752.1145
150Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
151Yersinia pestis Z176003BProt GE3654744,725,78852.3151
152Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
153Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
154Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
155Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
156Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
157Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
158Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
159Shewanella sp. MR-7BProt GA1390324,799,10952.1145
160Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
161Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
162Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
163Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
164Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
165Yersinia pestis CO92BProt GE3444,829,85552.4151
166Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
167Escherichia coli SE15BProt GE1905324,839,68349.3141
168Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
169Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
170Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
171Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
172Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
173Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
174Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
175Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
176Shigella flexneri 2002017BProt GE3363964,894,49249.4131
177Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
178Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
179Escherichia coli 536BProt GE1623514,938,92049.5141
180Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
181Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
182Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
183Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
184Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
185Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
186Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
187Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
188Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
189Shigella sonnei Ss046BProt GE1315155,055,31649.2142
190Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
191Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
192Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
193Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
194Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
195Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
196Vibrio sp. Ex25BProt GV4050725,089,02555.1154
197Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
198Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
199Escherichia coli IHE3034BProt GE4369315,108,38349.3131
200Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
201Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
202Escherichia coli IAI39BProt GE3341115,132,06849.4142
203Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
204Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
205Escherichia coli 55989BProt GE3341315,154,86249.3142
206Escherichia coli SE11BProt GE1805775,155,62649.3141
207Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
208Escherichia coli S88BProt GE3337525,166,12149.4142
209Escherichia coli UTI89BProt GE1625925,179,97149.4141
210Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
211Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
212Escherichia coli ED1aBProt GE3340915,209,54849.3142
213Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
214Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
215Escherichia coli CFT073BProt GE31315,231,42849.5141
216Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
217Escherichia coli E24377ABProt GE1396075,249,28849.4142
218Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
219Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
220Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
221Shewanella baltica OS185BProt GA1764325,312,91053.7146
222Shewanella baltica OS155BProt GA1338655,342,89653.8155
223Escherichia coli 042BProt GE4064725,355,32349.5152
224Escherichia coli UMN026BProt GE3341535,358,20049.3152
225Shewanella baltica OS223BProt GA1798545,358,88453.7146
226Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
227Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
228Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
229Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
230Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
231Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
232Klebsiella variicola At-22BProt GE3770115,458,50542.4131
233Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
234Serratia proteamaculans 568BProt GE1745925,495,65745.0142
235Escherichia coli APEC O1BProt GE1671835,497,65349.7141
236Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
237Shewanella baltica OS195BProt GA1338945,547,54453.8146
238Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
239Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
240Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
241Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
242Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
243Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
244Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
245Pseudomonas putida W619BProt GPs1705315,774,33038.61415
246Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
247Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
248Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
249Pseudomonas putida F1BProt GPs1390915,959,96438.11418
250Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
251Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
252Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
253Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
254Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
255Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
256Photobacterium profundum SS9BProt GV1312836,403,28058.3163
257Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
258Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
259Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
260Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
261Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
262Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
263Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
264Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146

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