Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Escherichia coli E24377ABProt GE1396075,249,28849.4142
2Escherichia coli SE11BProt GE1805775,155,62649.3141
3Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
4Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
5Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
6Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
7Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
8Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
9Shigella flexneri 2002017BProt GE3363964,894,49249.4131
10Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
11Shigella sonnei Ss046BProt GE1315155,055,31649.2142
12Shewanella baltica OS155BProt GA1338655,342,89653.8155
13Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
14Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
15Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
16Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
17Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
18Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
19Yersinia pestis CO92BProt GE3444,829,85552.4151
20Shewanella baltica OS195BProt GA1338945,547,54453.8146
21Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
22Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
23Shewanella baltica OS223BProt GA1798545,358,88453.7146
24Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
25Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
26Yersinia pestis D106004365074172,20252.3N/AN/AN/A
27Yersinia pestis D182038365454175,31952.2N/AN/AN/A
28Yersinia pestis Z176003BProt GE3654744,725,78852.3151
29Cronobacter turicensisBProt GE3996544,599,15542.7142
30Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
31Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
32Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
33Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
34Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
35Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
36Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
37Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
38Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
39Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
40Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
41Vibrio fischeri ES114BProt GV1298634,284,05061.6144
42Photobacterium profundum SS9BProt GV1312836,403,28058.3163
43Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
44Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
45Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
46Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
47Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
48Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
49Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
50Escherichia coli APEC O1BProt GE1671835,497,65349.7141
51Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
52Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
53Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
54Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
55Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
56Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
57Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
58Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
59Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
60Escherichia coli UMN026BProt GE3341535,358,20049.3152
61Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
62Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
63Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
64Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
65Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
66Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
67Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
68Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
69Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
70Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
71Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
72Yersinia pestis KIM 10BProt GE28824,701,74552.3141
73Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
74Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
75Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
76Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
77Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
78Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
79Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
80Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
81Shigella boydii Sb227BProt GE1314624,646,52048.9141
82Shewanella sp. MR-7BProt GA1390324,799,10952.1145
83Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
84Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
85Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
86Vibrio cholerae O395BProt GV1566724,132,31952.5143
87Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
88Escherichia coli UTI89BProt GE1625925,179,97149.4141
89Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
90Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
91Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
92Serratia proteamaculans 568BProt GE1745925,495,65745.0142
93Enterobacter sp. 638BProt GE1746124,676,46147.1143
94Shewanella baltica OS185BProt GA1764325,312,91053.7146
95Xylella fastidiosa M23BProt GX1845722,573,98748.3121
96Escherichia coli SE15BProt GE1905324,839,68349.3141
97Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
98Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
99Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
100Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
101Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
102Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
103Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
104Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
105Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
106Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
107Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
108Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
109Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
110Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
111Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
112Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
113Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
114Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
115Vibrio cholerae O395328532N/AN/AN/AN/AN/A
116Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
117Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
118Escherichia coli S88BProt GE3337525,166,12149.4142
119Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
120Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
121Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
122Vibrio sp. Ex25BProt GV4050725,089,02555.1154
123Escherichia coli 042BProt GE4064725,355,32349.5152
124Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
125Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
126Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
127Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
128Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
129Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
130Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
131Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
132Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
133Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
134Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
135Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
136Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
137Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
138Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
139Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
140Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
141Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
142Escherichia coli CFT073BProt GE31315,231,42849.5141
143Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
144Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
145Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
146Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
147Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
148Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
149Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
150Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
151Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
152Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
153Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
154Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
155Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
156Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
157Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
158Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
159Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
160Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
161Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
162Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
163Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
164Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
165Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
166Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
167Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
168Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
169Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
170Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
171Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
172Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
173Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
174Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
175Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
176Shewanella sp. MR-4BProt GA1390414,706,28752.1145
177Shewanella loihica PV-4BProt GA1390614,602,59446.3145
178Pseudomonas putida F1BProt GPs1390915,959,96438.11418
179Escherichia coli HSBProt GE1395914,643,53849.2141
180Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
181Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
182Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
183Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
184Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
185Escherichia coli 536BProt GE1623514,938,92049.5141
186Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
187Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
188Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
189Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
190Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
191Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
192Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
193Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
194Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
195Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
196Pseudomonas putida W619BProt GPs1705315,774,33038.61415
197Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
198Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
199Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
200Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
201Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
202Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
203Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
204Xylella fastidiosa M12BProt GX1782312,475,13048.1121
205Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
206Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
207Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
208Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
209Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
210Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
211Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
212Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
213Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
214Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
215Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A
216Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
217Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
218Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
219Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
220Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
221Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
222Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
223Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
224Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
225Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
226Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
227Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
228Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
229Escherichia coli DH1BProt GE3003114,630,70749.2142
230Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
231Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
232Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
233Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
234Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
235Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
236Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
237Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
238Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
239Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
240Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
241Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
242Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
243Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
244Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
245Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
246Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
247Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
248Escherichia coli IAI1BProt GE3337314,700,56049.2131
249Escherichia coli ED1aBProt GE3340915,209,54849.3142
250Escherichia coli IAI39BProt GE3341115,132,06849.4142
251Escherichia coli 55989BProt GE3341315,154,86249.3142
252Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
253Escherichia coli BW2952BProt GE3377514,578,15949.2142
254Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
255Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
256Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
257Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
258Klebsiella variicola At-22BProt GE3770115,458,50542.4131
259Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
260Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
261Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
262Escherichia coli IHE3034BProt GE4369315,108,38349.3131
263Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
264Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A

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