Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Available Tables
RowOrganismTax GroupNCBI Project IDRepliconsTotal Size (bp)% ATSigma 54
Factors
Sigma 70
Factors
ECF
Factors
1Xenorhabdus bovienii SS-2004133991N/AN/AN/AN/AN/A
2Escherichia coli O26:H11 str. 11368325095158,29150.6N/AN/AN/A
3Escherichia coli O103:H2 str. 1200932511275,54650.9N/AN/AN/A
4Escherichia coli O111:H- str. 11128325136395,00452.0N/AN/AN/A
5Vibrio cholerae O395328532N/AN/AN/AN/AN/A
6Shewanella violacea DSS12347391N/AN/AN/AN/AN/A
7Yersinia pestis D106004365074172,20252.3N/AN/AN/A
8Yersinia pestis D182038365454175,31952.2N/AN/AN/A
9Salmonella enterica subsp. enterica serovar Typhimurium406251N/AN/AN/AN/AN/A
10Escherichia coli B str. REL606182811N/AN/AN/AN/AN/A
11Sideroxydans lithotrophicus ES-1BProt BG3316113,003,65642.5136
12Acidithiobacillus ferrooxidans ATCC 23270BProt GA5312,982,39741.2151
13Colwellia psychrerythraea 34HBProt GA27515,373,18062.01412
14Saccharophagus degradans 2-40BProt GA31615,057,53154.21414
15Shewanella oneidensis MR-1BProt GA33525,131,41654.1145
16Idiomarina loihiensis L2TRBProt GA1079012,839,31853.0146
17Marinobacter aquaeolei VT8BProt GA1323934,779,76243.1154
18Alteromonas macleodii 'Deep ecotype'BProt GA1337414,412,28255.1147
19Shewanella amazonensis SB2BBProt GA1338514,306,14246.4155
20Shewanella baltica OS155BProt GA1338655,342,89653.8155
21Shewanella baltica OS195BProt GA1338945,547,54453.8146
22Shewanella denitrificans OS217BProt GA1339014,545,90654.9155
23Shewanella frigidimarina NCIMB 400BProt GA1339114,845,25758.4147
24Shewanella putrefaciens CN-32BProt GA1339314,659,22055.5155
25Pseudoalteromonas atlantica T6cBProt GA1345415,187,00555.4149
26Shewanella sp. W3-18-1BProt GA1390214,708,38055.4155
27Shewanella sp. MR-7BProt GA1390324,799,10952.1145
28Shewanella sp. MR-4BProt GA1390414,706,28752.1145
29Shewanella sp. ANA-3BProt GA1390525,251,14652.1145
30Shewanella loihica PV-4BProt GA1390614,602,59446.3145
31Pseudoalteromonas haloplanktis TAC125BProt GA1571323,850,27259.9146
32Psychromonas ingrahamii 37BProt GA1618714,559,59859.9133
33Aeromonas hydrophila subsp. hydrophila ATCC 7966BProt GA1669714,744,44838.4143
34Aeromonas salmonicida subsp. salmonicida A449BProt GA1672365,040,53641.8154
35Shewanella woodyi ATCC 51908BProt GA1745515,935,40356.314N/A
36Shewanella baltica OS185BProt GA1764325,312,91053.7146
37Shewanella piezotolerans WP3BProt GA1767515,396,47656.7158
38Shewanella baltica OS223BProt GA1798545,358,88453.7146
39Shewanella sediminis HAW-EB3BProt GA1878915,517,67453.9156
40Shewanella halifaxensis HAW-EB4BProt GA2024115,226,91755.4156
41Teredinibacter turnerae T7901BProt GA3083915,193,16449.1N/AN/AN/A
42Tolumonas auensis DSM 9187BProt GA3387313,471,29251.0133
43Dichelobacter nodosus VCS1703ABProt GC5011,389,35055.612N/A
44Baumannia cicadellinicola str. Hc (Homalodisca coagulata)BProt GC125131686,19466.8N/A2N/A
45Nitrosococcus oceani ATCC 19707BProt GC1399323,522,11149.7162
46Alkalilimnicola ehrlichii MLHE-1BProt GC1576313,275,94432.5142
47Halorhodospira halophila SL1BProt GC1576712,678,45232.0142
48Candidatus Carsonella ruddii PVBProt GC179771159,66283.4N/AN/AN/A
49Thioalkalivibrio sp. HL-EbGR7BProt GC2917713,464,55434.9146
50Thioalkalivibrio sp. K90mixBProt GC3075922,985,05634.5143
51Halothiobacillus neapolitanus c2BProt GC3104912,582,88645.3143
52Allochromatium vinosum DSM 180BProt GC3254733,669,07435.8141
53Nitrosococcus halophilus Nc4BProt GC3658924,145,26048.4162
54Nitrosococcus watsoni C-113BProt GC4033133,373,28649.9161
55Klebsiella pneumoniae subsp. pneumoniae MGH 78578BProt GE3165,694,89442.9132
56Yersinia pestis CO92BProt GE3444,829,85552.4151
57Yersinia enterocolitica subsp. enterocolitica 8081BProt GE19024,683,62052.8143
58Escherichia coli str. K-12 substr. MG1655BProt GE22514,639,67549.2142
59Escherichia coli O157:H7 str. SakaiBProt GE22635,594,47749.5141
60Salmonella enterica subsp. enterica serovar Typhi str. CT18BProt GE23635,133,71348.1141
61Salmonella enterica subsp. enterica serovar Typhimurium str. LT2BProt GE24124,951,37147.8141
62Buchnera aphidicola str. Bp (Baizongia pistaciae)BProt GE2562618,37974.7N/A2N/A
63Escherichia coli O157:H7 EDL933BProt GE25925,620,52249.5141
64Wigglesworthia glossinidia endosymbiont of Glossina brevipalpisBProt GE2742703,00477.5N/A3N/A
65Yersinia pestis KIM 10BProt GE28824,701,74552.3141
66Shigella flexneri 2a str. 301BProt GE31024,828,82149.3131
67Buchnera aphidicola str. Sg (Schizaphis graminum)BProt GE3121641,45474.7N/A2N/A
68Escherichia coli CFT073BProt GE31315,231,42849.5141
69Pectobacterium atrosepticum SCRI1043BProt GE35015,064,01949.0148
70Salmonella enterica subsp. enterica serovar Typhi str. Ty2BProt GE37114,791,96147.9141
71Shigella flexneri 2a str. 2457TBProt GE40814,599,35449.1121
72Candidatus Blochmannia floridanusBProt GE4431705,55772.6N/A2N/A
73Photorhabdus luminescens subsp. laumondii TTO1BProt GE960515,688,98757.2145
74Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67BProt GE961834,944,00047.9141
75Yersinia pestis biovar Microtus str. 91001BProt GE1063854,803,21752.3151
76Proteus mirabilis HI4320BProt GE1262424,099,89561.1142
77Citrobacter koseri ATCC BAA-895BProt GE1271634,735,35746.2152
78Cronobacter sakazakii ATCC BAA-894BProt GE1272034,530,77743.3131
79Yersinia pseudotuberculosis IP 32953BProt GE1295034,840,89852.4151
80Salmonella enterica subsp. arizonae serovar 62:z4,z23:--BProt GE1303014,600,80048.6141
81Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150BProt GE1308614,585,22947.8141
82Shigella dysenteriae Sd197BProt GE1314534,560,91149.0142
83Shigella boydii Sb227BProt GE1314624,646,52048.9141
84Shigella sonnei Ss046BProt GE1315155,055,31649.2142
85Candidatus Blochmannia pennsylvanicus str. BPENBProt GE138751791,65470.4N/A2N/A
86Escherichia coli HSBProt GE1395914,643,53849.2141
87Escherichia coli E24377ABProt GE1396075,249,28849.4142
88Shigella boydii CDC 3083-94BProt GE1563764,874,65949.0121
89Yersinia pestis AngolaBProt GE1606734,687,01452.4N/AN/A1
90Yersinia pseudotuberculosis IP 31758BProt GE1607034,935,12552.8151
91Escherichia coli 536BProt GE1623514,938,92049.5141
92Escherichia coli UTI89BProt GE1625925,179,97149.4141
93Sodalis glossinidius str. 'morsitans'BProt GE1630944,292,50245.5131
94Buchnera aphidicola str. Cc (Cinara cedri)BProt GE163722422,43479.8N/A2N/A
95Shigella flexneri 5 str. 8401BProt GE1637514,574,28449.1141
96Yersinia pestis AntiquaBProt GE1664544,879,83652.3151
97Yersinia pestis Nepal516BProt GE1664634,646,28652.4141
98Yersinia pestis Pestoides FBProt GE1670034,725,86252.3141
99Escherichia coli APEC O1BProt GE1671835,497,65349.7141
100Serratia proteamaculans 568BProt GE1745925,495,65745.0142
101Enterobacter sp. 638BProt GE1746124,676,46147.1143
102Escherichia coli SE11BProt GE1805775,155,62649.3141
103Escherichia coli ATCC 8739BProt GE1808314,746,21849.1152
104Salmonella enterica subsp. enterica serovar Newport str. SL254BProt GE1874735,007,71947.8141
105Escherichia coli SE15BProt GE1905324,839,68349.3141
106Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633BProt GE1945934,823,88747.8141
107Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853BProt GE1946724,917,45947.9141
108Escherichia coli SMS-3-5BProt GE1946955,215,37749.5151
109Salmonella enterica subsp. enterica serovar Heidelberg str. SL476BProt GE2004534,983,51547.9141
110Salmonella enterica subsp. enterica serovar Agona str. SL483BProt GE2006324,836,63848.0141
111Escherichia coli str. K-12 substr. DH10BBProt GE2007914,686,13749.2142
112Erwinia tasmaniensis Et1/99BProt GE2058564,067,86446.6144
113Escherichia coli BL21(DE3)BProt GE2071314,558,95349.2132
114Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594BProt GE2099324,888,49447.8141
115Klebsiella pneumoniae NTUH-K2044BProt GE2106925,472,67242.6132
116Escherichia coli O157:H7 str. EC4115BProt GE2773935,704,17149.6141
117Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7BProt GE2780314,858,88747.9132
118Klebsiella pneumoniae 342BProt GE2847135,920,25743.1132
119Edwardsiella tarda EIB202BProt GE2853923,804,16640.3141
120Yersinia pseudotuberculosis YPIIIBProt GE2874314,689,44152.5141
121Yersinia pseudotuberculosis PB1/+BProt GE2874524,765,43152.5151
122Escherichia coli BL21(DE3)BProt GE2896514,557,04149.2132
123Candidatus Riesia pediculicola USDABProt GE290652582,12771.4N/A4N/A
124Escherichia coli DH1BProt GE3003114,630,70749.2142
125Escherichia coli O157:H7 str. TW14359BProt GE3004525,622,73749.5N/A41
126Photorhabdus asymbioticaBProt GE3057725,094,13857.9143
127Escherichia coli BL21(DE3)BProt GE3068114,570,93849.2142
128Salmonella enterica subsp. enterica serovar Enteritidis str. P125109BProt GE3068714,685,84847.8141
129Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91BProt GE3068914,658,69747.8141
130Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601BProt GE3094314,581,79747.8141
131Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)BProt GE312231641,89573.7N/A2N/A
132Buchnera aphidicola str. 5A (Acyrthosiphon pisum)BProt GE312251642,12273.7N/A2N/A
133Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)BProt GE3125922,169,36359.5N/A31
134Pectobacterium carotovorum subsp. carotovorum PC1BProt GE3128914,862,91348.1148
135Pectobacterium wasabiae WPP163BProt GE3129315,063,89249.5143
136Dickeya zeae Ech1591BProt GE3129514,813,85445.5142
137Escherichia coli O127:H6 str. E2348/69BProt GE3257135,069,67849.5131
138Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SBProt GE3306724,964,09747.8141
139Dickeya dadantii Ech703BProt GE3306914,679,45045.0143
140Escherichia fergusonii ATCC 35469BProt GE3336924,643,86150.1141
141Escherichia coli IAI1BProt GE3337314,700,56049.2131
142Escherichia coli S88BProt GE3337525,166,12149.4142
143Escherichia coli ED1aBProt GE3340915,209,54849.3142
144Escherichia coli IAI39BProt GE3341115,132,06849.4142
145Escherichia coli 55989BProt GE3341315,154,86249.3142
146Escherichia coli UMN026BProt GE3341535,358,20049.3152
147Shigella flexneri 2002017BProt GE3363964,894,49249.4131
148Dickeya dadantii Ech586BProt GE3366714,818,39446.4143
149Escherichia coli BW2952BProt GE3377514,578,15949.2142
150Citrobacter rodentium ICC168BProt GE3468545,444,28345.5152
151Erwinia pyrifoliae Ep1/96BProt GE3477954,072,84646.6153
152Edwardsiella ictaluri 93-146BProt GE3485313,812,31542.6141
153Yersinia pestis Z176003BProt GE3654744,725,78852.3151
154Klebsiella variicola At-22BProt GE3770115,458,50542.4131
155Erwinia pyrifoliae DSM 12163BProt GE3787754,072,82746.6143
156Cronobacter turicensisBProt GE3996544,599,15542.7142
157Escherichia coli 042BProt GE4064725,355,32349.5152
158Escherichia coli O55:H7 str. CB9615BProt GE4272925,452,35349.5141
159Pantoea ananatis LMG 20103BProt GE4308514,690,29846.3145
160Escherichia coli IHE3034BProt GE4369315,108,38349.3131
161Erwinia amylovora ATCC 49946BProt GE4375733,905,60446.4153
162Enterobacter cloacae subsp. cloacae ATCC 13047BProt GE4579335,598,79645.4153
163Erwinia amylovora CFBP1430BProt GE4680523,833,83246.4153
164Kangiella koreensis DSM 16069BProt GK2944312,852,07356.312N/A
165Legionella pneumophila subsp. pneumophila str. Philadelphia 1BProt GL2213,397,75461.7141
166Coxiella burnetii RSA 493BProt GL4122,032,67457.4N/A3N/A
167Legionella pneumophila str. LensBProt GL1312623,405,51961.6141
168Legionella pneumophila str. ParisBProt GL1312723,635,49561.7141
169Coxiella burnetii Dugway 5J108-111BProt GL1672122,212,93757.6N/A3N/A
170Coxiella burnetii RSA 331BProt GL1679122,053,74457.3N/A3N/A
171Legionella pneumophila str. CorbyBProt GL1749113,576,47061.5141
172Legionella pneumophila 2300/99 AlcoyBProt GL1874313,516,33461.6141
173Coxiella burnetii CbuG_Q212BProt GL1913712,008,87057.4N/A3N/A
174Coxiella burnetii CbuK_Q154BProt GL1913922,102,38057.4N/A3N/A
175Legionella longbeachae NSW150BProt GL3957924,149,15862.9141
176Methylococcus capsulatus str. BathBProt GM2113,304,56136.4121
177Chromohalobacter salexigens DSM 3043BProt GO1263613,696,64936.1143
178Alcanivorax borkumensis SK2BProt GO1300513,120,14345.3122
179Hahella chejuensis KCTC 2396BProt GO1606417,215,26746.1146
180Marinomonas sp. MWYL1BProt GO1744515,100,34457.4146
181Haemophilus ducreyi 35000HPBProt GPa3811,698,95561.8N/A22
182Pasteurella multocida subsp. multocida str. Pm70BProt GPa3912,257,48759.6N/A22
183Haemophilus influenzae Rd KW20BProt GPa21911,830,13861.8N/A22
184Haemophilus somnus 129PTBProt GPa32222,012,87862.8N/A22
185Haemophilus somnus 2336BProt GPa38812,263,85762.6N/A22
186Haemophilus influenzae 86-028NPBProt GPa1175211,913,42861.8N/A22
187Mannheimia succiniciproducens MBEL55EBProt GPa1306812,314,07857.5N/A21
188Actinobacillus succinogenes 130ZBProt GPa1337012,319,66355.1N/A22
189Haemophilus influenzae PittEEBProt GPa1640011,813,03362.0N/A22
190Haemophilus influenzae PittGGBProt GPa1640111,887,19262.0N/A22
191Actinobacillus pleuropneumoniae L20BProt GPa1822112,274,48258.7N/A22
192Actinobacillus pleuropneumoniae serovar 3 str. JL03BProt GPa1913512,242,06258.8N/A22
193Actinobacillus pleuropneumoniae serovar 7 str. AP76BProt GPa2990942,345,43558.8N/A22
194Haemophilus parasuis SH0165BProt GPa3109912,269,15660.0N/A21
195Aggregatibacter aphrophilus NJ8700BProt GPa3657912,313,03557.8N/A22
196Aggregatibacter actinomycetemcomitans D11S-1BProt GPa4010742,204,66555.7N/A22
197Pseudomonas fluorescens Pf0-1BProt GPs1216,438,40539.51421
198Azotobacter vinelandii DJBProt GPs1615,365,31834.31416
199Pseudomonas putida KT2440BProt GPs26716,181,86338.51419
200Pseudomonas syringae pv. syringae B728aBProt GPs32316,093,69840.814N/A
201Pseudomonas fluorescens Pf-5BProt GPs32717,074,89336.71428
202Pseudomonas aeruginosa PAO1BProt GPs33116,264,40433.41419
203Pseudomonas syringae pv. tomato str. DC3000BProt GPs35936,538,26041.714N/A
204Pseudomonas aeruginosa UCBPP-PA14BProt GPs38616,537,64833.714N/A
205Psychrobacter arcticus 273-4BProt GPs963312,650,70157.212N/A
206Acinetobacter sp. ADP1BProt GPs1235213,598,62159.6125
207Pseudomonas syringae pv. phaseolicola 1448ABProt GPs1241636,112,44842.1149
208Pseudomonas putida F1BProt GPs1390915,959,96438.11418
209Psychrobacter cryohalolentis K5BProt GPs1392023,101,09757.812N/A
210Psychrobacter sp. PRwf-1BProt GPs1575932,995,04955.212N/A
211Pseudomonas aeruginosa PA7BProt GPs1672016,588,33933.61417
212Pseudomonas entomophila L48BProt GPs1680015,888,78035.814N/A
213Pseudomonas stutzeri A1501BProt GPs1681714,567,41836.1146
214Pseudomonas putida W619BProt GPs1705315,774,33038.61415
215Pseudomonas putida GB-1BProt GPs1762916,078,43038.11433
216Acinetobacter baumannii AB0057BProt GPs2111124,059,24260.8122
217Cellvibrio japonicus Ueda107BProt GPs2832914,576,57348.0148
218Acinetobacter baumannii AYEBProt GPs2892154,048,73560.7121
219Acinetobacter baumannii AB307-0294BProt GPs3099313,760,98161.0121
220Pseudomonas aeruginosa LESB58BProt GPs3110116,601,75733.71419
221Pseudomonas fluorescens SBW25BProt GPs3122927,147,63339.91625
222Acinetobacter sp. DR1BProt GPs4610514,152,54361.3124
223Moraxella catarrhalis RH4BProt GPs4686911,863,28658.3N/A2N/A
224Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)BProt GS1684111,160,78266.0N/A2N/A
225Candidatus Vesicomyosocius okutanii HABProt GS1826711,022,15468.4N/A2N/A
226Francisella tularensis subsp. tularensis SCHU S4BProt GT911,892,81967.7N/A2N/A
227Thiomicrospira crunogena XCL-2BProt GT1301812,427,73456.9132
228Francisella novicida U112BProt GT1608811,910,03167.5N/A2N/A
229Francisella tularensis subsp. holarcticaBProt GT1642111,895,99467.8N/A2N/A
230Francisella tularensis subsp. holarctica OSU18BProt GT1726511,895,72767.8N/A2N/A
231Francisella tularensis subsp. tularensis WY96-3418BProt GT1845911,898,47667.7N/A2N/A
232Francisella tularensis subsp. mediasiatica FSC147BProt GT1957111,893,88667.8N/A2N/A
233Francisella tularensis subsp. holarctica FTNF002-00BProt GT2019711,890,90967.8N/A2N/A
234Francisella philomiragia subsp. philomiragia ATCC 25017BProt GT2785322,049,71167.4N/A2N/A
235Francisella tularensis subsp. holarctica OSU18BProt GT3202511,895,72767.8N/AN/AN/A
236Francisella tularensis subsp. tularensis NE061598BProt GT3828911,892,68167.7N/A2N/A
237Vibrio cholerae O1 biovar El Tor str. N16961BProt GV3624,033,46452.5143
238Vibrio vulnificus CMCP6BProt GV34925,126,79753.3143
239Vibrio parahaemolyticus RIMD 2210633BProt GV36025,165,77054.6154
240Vibrio vulnificus YJ016BProt GV143035,260,08653.3143
241Vibrio fischeri ES114BProt GV1298634,284,05061.6144
242Photobacterium profundum SS9BProt GV1312836,403,28058.3163
243Vibrio cholerae O395BProt GV1566724,132,31952.5143
244Vibrio fischeri MJ11BProt GV1939334,503,33661.8154
245Vibrio harveyi ATCC BAA-1116BProt GV1985736,058,37754.6165
246Aliivibrio salmonicida LFI1238BProt GV3070364,655,66061.0151
247Vibrio splendidus LGP32BProt GV3281524,974,82156.1154
248Vibrio cholerae M66-2BProt GV3285123,938,90552.4143
249Vibrio cholerae MJ-1236BProt GV3355524,236,36852.7143
250Vibrio sp. Ex25BProt GV4050725,089,02555.1154
251Xanthomonas campestris pv. campestris str. 8004BProt GX1515,148,70835.023N/A
252Xylella fastidiosa Temecula1BProt GX28522,521,14848.2121
253Xanthomonas campestris pv. campestris str. ATCC 33913BProt GX29615,076,18834.923N/A
254Xanthomonas axonopodis pv. citri str. 306BProt GX29735,274,17435.3238
255Xanthomonas oryzae pv. oryzae KACC10331BProt GX1293114,941,43936.3236
256Xanthomonas campestris pv. vesicatoria str. 85-10BProt GX1364955,420,15235.4239
257Xanthomonas oryzae pv. oryzae MAFF 311018BProt GX1629714,940,21736.3236
258Stenotrophomonas maltophilia R551-3BProt GX1710714,573,96933.72319
259Xylella fastidiosa M12BProt GX1782312,475,13048.1121
260Xylella fastidiosa M23BProt GX1845722,573,98748.3121
261Xanthomonas oryzae pv. oryzae PXO99ABProt GX2812715,240,07536.4346
262Xanthomonas campestris pv. campestris str. B100BProt GX2980115,079,00235.0239
263Stenotrophomonas maltophilia K279aBProt GX3035114,851,12633.72318
264Escherichia coli RS218VDCP19411140,20753.1N/AN/AN/A

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